PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734844
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SBP
Protein Properties Length: 939aa    MW: 104976 Da    PI: 5.9436
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734844genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22.1e-42148225178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cqve+C+adls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  676734844 148 VCQVENCDADLSKVKDYHRRHKVCEMHSKATSAIVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 225
                6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-34143210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.599146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-39148227IPR004333Transcription factor, SBP-box
PfamPF031105.7E-31149222IPR004333Transcription factor, SBP-box
SuperFamilySSF484038.86E-8729830IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.7E-8731828IPR020683Ankyrin repeat-containing domain
CDDcd002041.91E-9731827No hitNo description
PROSITE profilePS502978.694731827IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 939 aa     Download sequence    Send to blast
MEARVEDEGQ HFYGFRAMDL RSVGKKSVEW DLNDWKWDGD LFVATQLNPG ASETIGRQFF  60
PIGNSSNSSS SCSDEGNNHN NTESTVRGTR EIERKRRAAT TGEENNNGGG GGLTLKLGDN  120
GYDLNGDREG NSAAKKTKFG GGVTNRSVCQ VENCDADLSK VKDYHRRHKV CEMHSKATSA  180
IVGGIMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNKRR RKTNPEPGAN GNPLSDDNQS  240
SNYLLISLLK ILSNMHSNRS DHPGDQDLMS HLLKSLVSHA GEQLGKNLVE LLLQGGSQAS  300
LNIGNSGLLA IDQAPQEDLK QTPEIPRQEL YANGTATENR SEKRAKVNDF DLNDIYIDSD  360
DGTYIERSPP PTNPATSSLD YPSWIHQSSP PQTSRNSDSA SDQSPSSSSE DAQMRTGRIV  420
FKLFGKEPND FPVVLRGQIL DWLSHSPTDM ESYIRPGCIV LTIYLRQAET AWEELSDDMG  480
FSLSKLLALS DDPLWTTGWI YVRVQNQLAF VFDGQVVVDT SLPLRSRDYS HIINVRPLAV  540
AATGKAQFTV KGINLRRPGT RLLCAVEGKY LIEETAHDSA KENDDLKENS EIVECVNFSC  600
DLPITSGRGF MEIEDQGLSS SFFPFIVLEE DDVCSEIRIL ETTLEFTETD SAKQAMEFIH  660
EMGWLLHRSK LGESDPNPDV FPLTRFKWLI EFSMDREWCA VIRKLLNMFF EGAVGDFSSS  720
SDAELSELCL LHRAVRKNSK PMVQMLLRYV PKQQRQSLFR PDAAGPAGLT PLHIAAGKDG  780
SEDVLDALTE DPAMVGIEAW RTSRDSTGFT PEDYARLRGH FSYIHLIQRK INKKSTTEDH  840
VVVNIPVSFS DREQKERKSG PMASALEITH ANHQLQCKLC DHKLVYGTAR RSVAYRPAML  900
SMVAIAAVCV CVALLFKSCP EVLYVFQPFR WELLDYGTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32142222484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734844
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397898.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLV4N2D60.0V4N2D6_EUTSA; Uncharacterized protein
STRINGXP_006397898.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]