PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734940
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 211aa    MW: 23761.8 Da    PI: 9.7096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734940genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-1963112356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f ta+eAa+a++ a+ +++g+
  676734940  63 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTADEAARAYDVAAIRIRGA 112
                9*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-3362120IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2262120IPR016177DNA-binding domain
PROSITE profilePS5103224.67162119IPR001471AP2/ERF domain
SMARTSM003801.1E-3962125IPR001471AP2/ERF domain
PfamPF008476.0E-1363111IPR001471AP2/ERF domain
PRINTSPR003671.4E-116374IPR001471AP2/ERF domain
CDDcd000181.89E-3463121No hitNo description
PRINTSPR003671.4E-1185101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MCRGAVISDF IWSKPSFAES DPSKLGYEGS VSMEKRVFSE QVGGKKEDGT EKKKRKRERK  60
NLYRGIRQRP WGKWAAEIRD PRKGVRVWLG TFKTADEAAR AYDVAAIRIR GAKAKLNFPN  120
DSTRSNNNNS KEVGGGGHLI NACESRPPPP PSSKDKDNQV VKLLSEELMA FEDYMIFYQI  180
PYLDGQSATD DAPQLSLVGN LWSFQEQDTL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2363119663ATERF1
3gcc_A9e-2363119663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159KKKRKRERK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0025352e-65AC002535.3 Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence.
GenBankAY0746452e-65AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.
GenBankCP0026852e-65CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634579.11e-96PREDICTED: ethylene-responsive transcription factor ERF071
RefseqXP_013674805.11e-96ethylene-responsive transcription factor ERF071-like
SwissprotO222596e-66ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A0D3C6Q83e-95A0A0D3C6Q8_BRAOL; Uncharacterized protein
STRINGBo4g198690.15e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-49ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]