PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735002
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 473aa    MW: 50601.2 Da    PI: 8.6688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-105174427
               ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
               + C +++rtG C yG rC+++H++
  676735002 51 PDCAYYMRTGVCGYGTRCRYNHPR 74
               68********************96 PP
2zf-CCCH40.44.7e-1395119327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+f+++tGtCk+G++CkF+H++
  676735002  95 EPPCQFYLKTGTCKFGASCKFHHPK 119
                79*********************96 PP
3zf-CCCH36.21e-11141165327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                + +C+++++tG+Ck+G +CkF+H++
  676735002 141 ENECSYYLKTGQCKFGITCKFHHPQ 165
                678********************97 PP
4zf-CCCH37.83.2e-12294320127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+++++tG Ck+G +CkF+H++
  676735002 294 PGEPECQYYLKTGDCKFGTSCKFHHPR 320
                5799*********************96 PP
5zf-CCCH32.41.6e-10341366227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +  +C f+ ++G+Ck+G++CkF H++
  676735002 341 GVQRCTFYVQNGFCKFGSTCKFDHPM 366
                6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3854775IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-54774IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-85174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90192120IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-792119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-695120IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1095119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-597118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995138166IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5138165IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9141165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356293321IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5293320IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5299321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23339367IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5339366IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8341366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6341370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5345365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDMYGRNPPM SGSQSAHAPE WTPGEPDTGL EESMWRLGLG SETYPERPAA PDCAYYMRTG  60
VCGYGTRCRY NHPRDRATVE ATVRATGQYP ERIGEPPCQF YLKTGTCKFG ASCKFHHPKN  120
AGGSMSHVPL NMYGYPVREG ENECSYYLKT GQCKFGITCK FHHPQPAGAT VPPPPPAASA  180
PQFYPSVQSL MPDQYGGPSS SLRVARPLLP GSYMQGAYGP MLLTPGVLPI QGWSPYSAPV  240
SPALSPGAQH AVGATSLYGV TQLSSAAPSL PGVYPSLSSP TGVIQKEQSF PERPGEPECQ  300
YYLKTGDCKF GTSCKFHHPR DRVPPRANCV LSPIGLPLRP GVQRCTFYVQ NGFCKFGSTC  360
KFDHPMGTIR YNPSASSLAD APVAPYPVSS LLGALAAAPS SSSSTELISG AAKDPYLSGL  420
PTSRSTSNIS AGLIFSQSGG SIPFSDLQLS SQTSLPLTGS RITRQGREIR RSF
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294141.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639387.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639388.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639389.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGXP_006294141.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein