PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735124
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 533aa    MW: 58964.5 Da    PI: 5.72
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735124genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.32.4e-921615322374
       GRAS   2 velLlecAeavssgdle........laqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                +e+L+++Ae + +++++        laq +Larl+++ +s++   p+qR+a+ + +AL + l++         +p   +++n + ++aa++ fse sP+l
  676735124 161 IEQLFNAAELIGTNNNNnnngdhtvLAQGILARLNHHlNSNYNkAPFQRAASLISQALLSLLHD--------ASPPLITPENLILRIAAYRSFSESSPFL 252
                67899999999886665556666679**********985555548******************9........4444555678****************** PP

       GRAS  92 kfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLa...sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                +f ++taNq Ile+  ++     +r+HiiDfd+++G+QW +L+q+La    R++ + sl+iT++++p s+  ++ el+ t+e+L++fA e+++pfe ++l
  676735124 253 QFVNFTANQSILESCTTDdelgfDRIHIIDFDVGYGGQWSSLMQELAsggRRRNRASSLKITVFAPPPSTvsDEFELRFTEENLRSFAGEVKIPFEMELL 352
                **************99887788899**********************6544779999*********9988899**************************9 PP

       GRAS 182 vakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y+++l++sl+a+   + 
  676735124 353 SLDLLLNPAYWPLSLRSseKEAVAVNLPVNSVVSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTTLLESLDAN---QC 441
                888888889999988877799*****999655554........5677***********************************************9...68 PP

       GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +++++vEr+++++ i++++a+++++     e+   Wr+ ++++GF+p +ls++a++qa++ll++++++g++ve+++ slv++W++++Lv+vSaW+
  676735124 442 QQDSSVERFWVQPCIEKLLAKRHRW----IERSPPWRSLFTQCGFTPGSLSQTAEAQAECLLQRHPVRGFHVEKRQSSLVMCWQRKELVTVSAWK 532
                *************************....89999************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.053134512IPR005202Transcription factor GRAS
PfamPF035148.3E-90161532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MGLEDLDGVL SASSPGQEQS ILRLIMDPAS GFGVFDPGFG FGSGSLPVND NSNHLLSSCS  60
FPPFQETTNQ DALINQSPCL FSNPPSSPPA KRFNSGSHQP VFPFPDPDPG HDPFLLRRHQ  120
FPFQFQQQQI PSSSSSAAAL VPVPVQVPSP GMAGDDQSVI IEQLFNAAEL IGTNNNNNNN  180
GDHTVLAQGI LARLNHHLNS NYNKAPFQRA ASLISQALLS LLHDASPPLI TPENLILRIA  240
AYRSFSESSP FLQFVNFTAN QSILESCTTD DELGFDRIHI IDFDVGYGGQ WSSLMQELAS  300
GGRRRNRASS LKITVFAPPP STVSDEFELR FTEENLRSFA GEVKIPFEME LLSLDLLLNP  360
AYWPLSLRSS EKEAVAVNLP VNSVVSGYLP LILRFLKQIS PNVVVCSDRG CDRNDAPFPN  420
AVIHALQYHT TLLESLDANQ CQQDSSVERF WVQPCIEKLL AKRHRWIERS PPWRSLFTQC  480
GFTPGSLSQT AEAQAECLLQ RHPVRGFHVE KRQSSLVMCW QRKELVTVSA WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2724253280375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397697.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A1J3CUH10.0A0A1J3CUH1_NOCCA; Scarecrow-like protein 27
TrEMBLA0A1J3GGJ40.0A0A1J3GGJ4_NOCCA; Scarecrow-like protein 27
STRINGXP_006397697.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]