PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735176
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 163aa    MW: 18168.9 Da    PI: 8.235
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735176genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-38181181100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+++l+yeA ar++dPvyG+vg++++lq+q+++l+ae+a++++
  676735176  18 PCGACKFLRRKCVRGCVFAPYFDAEQgAARFAAVHKVFGASNASKMLLRLPFHRRLDAVATLCYEALARLHDPVYGSVGHLFSLQHQVMNLQAEIAHVQA 117
                7***********************9989********************************************************************9997 PP

     DUF260 100 e 100
                +
  676735176 118 R 118
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.817119IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3718116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MMTGNMNGDR RGGGGGGPCG ACKFLRRKCV RGCVFAPYFD AEQGAARFAA VHKVFGASNA  60
SKMLLRLPFH RRLDAVATLC YEALARLHDP VYGSVGHLFS LQHQVMNLQA EIAHVQARLS  120
TFQFFSLISP QQMLQPPFDL THNNEYPMEP PTNLDFVWED QLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-37141167110LOB family transfactor Ramosa2.1
5ly0_B9e-37141167110LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-108AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.16e-92PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.16e-92PREDICTED: LOB domain-containing protein 19-like
SwissprotO221322e-80LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A087H5D21e-82A0A087H5D2_ARAAL; Uncharacterized protein
STRINGA0A087H5D22e-83(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-83LOB domain-containing protein 19