PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735408
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20402.1 Da    PI: 10.7129
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735408genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.7e-16957149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k i++ + rq+tf kRr g++KKA  L  LC++evav+i s+tgk y +
  676735408  9 KYIQDRITRQITFYKRRIGLIKKADTLAKLCNVEVAVLINSPTGKPYVF 57
               56999***************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.455161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-24160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-22279IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-15323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-181157IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGHKKIKIKY IQDRITRQIT FYKRRIGLIK KADTLAKLCN VEVAVLINSP TGKPYVFGSP  60
CFNSVVGRFL YPSLRRSENS SPSLKQTRIL ESRAKLDRLM EELKQQKEHE KVLKNRQKEI  120
TENDVKKTVD LKLEGFAALK RKLEAARDDM KCKFMEMEAS SSLLMLSKNK KKPDKI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735408
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGBostr.15654s0054.1.p1e-45(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.12e-38AGAMOUS-like 102