PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676735582

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 260aa MW: 29026.5 Da PI: 8.2077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676735582	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	68	111	3	51
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 r+h +E+rRRdriNs ++ Lr+l+P + Kl+Ka+ L +++e + 676735582 68 RSHRLAEKRRRDRINSHLSALRKLVPDS-----DKLDKAALLARVIEEV 111 68***********************8.....7*******999965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-12	64	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.456	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.96E-10	68	113	No hit	No description
Pfam	PF00010	2.6E-10	68	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-13	69	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MENSYDSEAA KWTDSTSPYN MVSWSLLQSD SSDSDLSRFN LGFSSSSSNN FLADELVGGI 60 EKAESLSRSH RLAEKRRRDR INSHLSALRK LVPDSDKLDK AALLARVIEE VKEFKQKAKE 120 SPIFQDLPTE ADEVTVQPET ISNGFESDTT NNRVVIFKAS FCCEDQPESI SEIVRVLTKF 180 QLETIQAQII CVGGRMRINF ILKEKASTAT STTTTSAKAL KQSLCAALNR ITSSSSSSTS 240 SVCRIRSKRQ RWFLSSHYSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676735582

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411274.1	1e-137	transcription factor bHLH51
Swissprot	Q9XEF0	1e-136	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A1J3CQ23	1e-138	A0A1J3CQ23_NOCCA; Transcription factor bHLH51
TrEMBL	A0A398A4B2	1e-138	A0A398A4B2_BRACM; Uncharacterized protein
STRING	XP_006411274.1	1e-137	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-115	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]