PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735660
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 156aa    MW: 18109.6 Da    PI: 8.4187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735660genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.86.8e-3091382128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya...tgkrknr.atksgyWkatgkdkevlsk 95 
                ppG rF Ptd  lv +yL+  v++++     +i+++d+y+ ePw Lp+ ++   ++kewy+Fs++ k+     + + +++   + g W++tg ++++++k
  676735660   9 PPGSRFLPTDLGLVRHYLRDMVDKNESG---FITTLDVYNDEPWLLPHVHNDlfKRKEWYYFSPSYKTGGstlHRTVPRKgESEGGSWNSTGGKEAIMDK 105
                9**********************99954...5***************5333355889*******988655222222333344779*************** PP

        NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                ++e+ g k+++v+ k+ ++k ekt+W+m ey+l
  676735660 106 NNEVEGYKQSFVYNKNAKEKIEKTNWLMTEYSL 138
                *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-354152IPR003441NAC domain
PROSITE profilePS5100534.188154IPR003441NAC domain
PfamPF023651.4E-179138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKTQVPTFPP GSRFLPTDLG LVRHYLRDMV DKNESGFITT LDVYNDEPWL LPHVHNDLFK  60
RKEWYYFSPS YKTGGSTLHR TVPRKGESEG GSWNSTGGKE AIMDKNNEVE GYKQSFVYNK  120
NAKEKIEKTN WLMTEYSLPQ IIDHDLVLCH IKAVLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-16715116162NO APICAL MERISTEM PROTEIN
1ut4_B5e-16715116162NO APICAL MERISTEM PROTEIN
1ut7_A5e-16715116162NO APICAL MERISTEM PROTEIN
1ut7_B5e-16715116162NO APICAL MERISTEM PROTEIN
3swm_A5e-16715119165NAC domain-containing protein 19
3swm_B5e-16715119165NAC domain-containing protein 19
3swm_C5e-16715119165NAC domain-containing protein 19
3swm_D5e-16715119165NAC domain-containing protein 19
3swp_A5e-16715119165NAC domain-containing protein 19
3swp_B5e-16715119165NAC domain-containing protein 19
3swp_C5e-16715119165NAC domain-containing protein 19
3swp_D5e-16715119165NAC domain-containing protein 19
4dul_A5e-16715116162NAC domain-containing protein 19
4dul_B5e-16715116162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556272.14e-52NAC domain-containing protein 6-like
SwissprotQ9LR741e-34NAC6_ARATH; NAC domain-containing protein 6
TrEMBLA0A078GFI22e-54A0A078GFI2_BRANA; BnaC04g01450D protein
TrEMBLA0A3P6BDM42e-52A0A3P6BDM4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BZZ92e-54A0A3P6BZZ9_BRAOL; Uncharacterized protein
STRINGBostr.25463s0411.1.p9e-51(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.16e-37NAC domain containing protein 6