PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735664
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 381aa    MW: 43772.3 Da    PI: 4.6556
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735664genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.52.6e-23521813128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevl 93 
                 G rF Ptd   v   Lk  v++++  +   i+++d+y  +Pw L++  ++    ++ewy+Fs+r+k+   gk  nr+       + g+Wk+t  +k+++
  676735664  52 SGSRFTPTDLGAVRVNLKDMVKNNQPGF---ITTLDVYGNDPWLLNHV-HNdlfMRNEWYYFSRRNKRG--GKTINRTvprseeSEGGTWKSTDGKKKIT 145
                699********************99665...9*************843.33244678*******99976..4555554344444679************* PP

        NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 + k+ + g ++ +v+yk  + + +ktdW+m ey+l
  676735664 146 GAdKTLVEGFRQNFVYYKTVKGEIKKTDWLMTEYSL 181
                98444558**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-2848194IPR003441NAC domain
PROSITE profilePS5100530.83150196IPR003441NAC domain
PfamPF023659.2E-1553181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVIDKCKSTV DESSNFDYVH GQETSSCLND PLQASSSRLP QHIDHITTGF RSGSRFTPTD  60
LGAVRVNLKD MVKNNQPGFI TTLDVYGNDP WLLNHVHNDL FMRNEWYYFS RRNKRGGKTI  120
NRTVPRSEES EGGTWKSTDG KKKITGADKT LVEGFRQNFV YYKTVKGEIK KTDWLMTEYS  180
LDDAQAEFVL CHIRGKIEKK VKDGFVKQMP QVKTNILSTQ VQDEETGLTG GVNPIDMTTL  240
KRDHGDITHQ QQQEQDTPIL VPSSRGSQDS GLETQNNNDI NFMPMSRQEQ DTPTLVPPSR  300
ERQDSDNDDF DDLLMWWPND DDSECQLDDI INYEFEFPDD FMIEIDDMID QVRDEDARAR  360
AAHRPYASAH FSSSYYGFPQ Y
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411314.11e-62NAC domain-containing protein 6
TrEMBLV4MC613e-61V4MC61_EUTSA; Uncharacterized protein
STRINGXP_006411314.15e-62(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.13e-31NAC domain containing protein 6