PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676735872

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 338aa MW: 37590 Da PI: 7.6004

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676735872	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	8.8e-53	16	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 lppGfrFhPtdeelvv+yLk+k+++++l++ +i++vd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ 676735872 16 LPPGFRFHPTDEELVVHYLKRKADSSPLPV-AIIADVDLYKFDPWELPAKALFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTggggg 114 79**************************.88***********8877899***********************************999998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl 676735872 115 gGNKKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 148 88888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-65	12	181	IPR003441	NAC domain
PROSITE profile	PS51005	61.511	16	180	IPR003441	NAC domain
Pfam	PF02365	7.8E-28	17	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MESTDSTGGP PPQPNLPPGF RFHPTDEELV VHYLKRKADS SPLPVAIIAD VDLYKFDPWE 60 LPAKALFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVISTG GGGGGGNKKV 120 GVKKALVFYS GKPPKGVKSD WIMHEYRLTD NKQPSLPCDF GNKKNSLRLD DWVLCRIYKK 180 NNSTSSRHHP HHHHGLDNDK DHHHNHFHHD MMIHDDLYRQ IPLSIPAAHN VSRMNLFPEI 240 FSDNNDPAAI YDGGGGNYSL HHSFASSSGT KQELKPNVLM PVWEEGNQDH PDKRFNGGVG 300 DCSNIVSTIA APSLMQQQGG VLGDGLVTTS YQLPGLNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-73	15	183	14	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676735872

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392856.2	1e-170	NAC domain-containing protein 18
Swissprot	Q9LD44	1e-129	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A1J3C8L7	1e-171	A0A1J3C8L7_NOCCA; NAC domain-containing protein 18 (Fragment)
STRING	Bra018997.1-P	1e-161	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52880.1	1e-117	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]