PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735876
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21027.6 Da    PI: 7.2353
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735876genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.5e-142411150
               HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               vtfskRr gi  K +E+SvLC+++v  +i+s  gk y++ 
  676735876  2 VTFSKRRSGIYTKLSEISVLCGVDVGFLIYSGAGKPYTFG 41
               9*************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.96144IPR002100Transcription factor, MADS-box
PfamPF003193.0E-16140IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-6243IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-17262IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-8621IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-82142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVTFSKRRSG IYTKLSEISV LCGVDVGFLI YSGAGKPYTF GSPSFDAVAQ RFLERFHHRQ  60
TMHGEGSSMP SSSSMIVDAH TKVRMDELCR NLSNLMEQTH AEEEKRKKAE SAYEPSLPVK  120
SDAWWKVAPK DEEEAKVLLK RFETFYEDLC DVATEKCRGR YADASTPSSS LPHQANLTRD  180
NFNHHG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735876
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474462.17e-73PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_018474473.17e-73PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A397XXX96e-68A0A397XXX9_BRACM; Uncharacterized protein
STRINGBo5g061120.12e-68(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-39AGAMOUS-like 64