PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676735962

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 255aa MW: 29415.2 Da PI: 7.9949

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676735962	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	125.9	3.3e-39	5	133	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 +GfrF+Ptd+e+v++yL+ k g++ ++e+i+++di++++Pw+Lp ++++++++ wyfF ++++ky++g+r++r tksg+Wk+tg + +v++k 676735962 5 VGFRFRPTDDEIVDHYLRLKNLGDStsrSYVDEAITTLDICSFDPWELPcqSRMESRDQVWYFFGRKENKYHRGERQSRGTKSGFWKKTGVTMDVKRKrg 104 8*****************99988665445668**********96448889999*********************************9977 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g ++L+fy +g+k++Wvmhey++ 676735962 105 NREKIGEERVLMFY----MSGSKSNWVMHEYHA 133 7888******....7899*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.95	3	152	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-40	4	152	IPR003441	NAC domain
Pfam	PF02365	1.5E-22	5	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVTVVGFRFR PTDDEIVDHY LRLKNLGDST SRSYVDEAIT TLDICSFDPW ELPCQSRMES 60 RDQVWYFFGR KENKYHRGER QSRGTKSGFW KKTGVTMDVK RKRGNREKIG EERVLMFYMS 120 GSKSNWVMHE YHATCLSPAQ NMTYTICKVQ FKGEAREISS SAGEIVEHTH SLTTHMNKNN 180 YGQLSTGSEE LQNPPEVSGV LDKQQKMQLE VSIQKAFDSL LSYDWKSLLD VLDENEQSKT 240 ASMQKSLTSV LIGHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-24	6	131	18	138	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676735962

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013695676.1	1e-114	NAC domain-containing protein 5-like
Swissprot	O81914	2e-93	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWW4	1e-107	M4EWW4_BRARP; Uncharacterized protein
STRING	Bra033299.1-P	1e-108	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-95	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]