PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736128
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26591.1 Da    PI: 9.8597
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736128genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  676736128  9 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58
               79***********************************************8 PP
2K-box93.82.9e-31761753100
      K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn..ellleqieelqkkekelqeenkaLrkklee 100
                ++++ s++e +a+++qqe+akL+++i+++q+++R+l+G++L+ Ls+keL+q+e++Lek++++iRskK+  elll++ie+lqk+e el++e  +Lr+k++e
  676736128  76 NTNTHSVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSALSVKELKQVENRLEKAISRIRSKKKqhELLLAEIENLQKREIELDNESIYLRTKIAE 175
                45556699*********************************************************9862268*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.034161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-33283IPR002100Transcription factor, MADS-box
CDDcd002658.99E-43275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2286173IPR002487Transcription factor, K-box
PROSITE profilePS5129713.68987179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN  60
NIRSTIERYK KASSDNTNTH SVQEINAAYY QQESAKLRQQ IQTIQNSNRN LMGDSLSALS  120
VKELKQVENR LEKAISRIRS KKKQHELLLA EIENLQKREI ELDNESIYLR TKIAEVERFQ  180
QHHHQMVSGN EMTAIEVLAS RNYFAHSIMT AGSGSGAGQG CSYSDPDKKI HLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-22185188Myocyte-specific enhancer factor 2B
1tqe_Q8e-22185188Myocyte-specific enhancer factor 2B
1tqe_R8e-22185188Myocyte-specific enhancer factor 2B
1tqe_S8e-22185188Myocyte-specific enhancer factor 2B
6c9l_A8e-22185188Myocyte-specific enhancer factor 2B
6c9l_B8e-22185188Myocyte-specific enhancer factor 2B
6c9l_C8e-22185188Myocyte-specific enhancer factor 2B
6c9l_D8e-22185188Myocyte-specific enhancer factor 2B
6c9l_E8e-22185188Myocyte-specific enhancer factor 2B
6c9l_F8e-22185188Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU201820.0U20182.1 Arabidopsis thaliana MADS-box protein AGL11 (AGL11) mRNA, complete cds.
GenBankAY0872010.0AY087201.1 Arabidopsis thaliana clone 32791 mRNA, complete sequence.
GenBankEU5517670.0EU551767.1 Capsella bursa-pastoris SEEDSTICK-like protein (STKb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113581.11e-161PREDICTED: agamous-like MADS-box protein AGL11 isoform X1
SwissprotQ388361e-142AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A3P5Y0I31e-160A0A3P5Y0I3_BRACM; Uncharacterized protein
TrEMBLM4F9Y11e-160M4F9Y1_BRARP; Uncharacterized protein
STRINGBra037895.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49942234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-144MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]