PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736232
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 193aa    MW: 22639.3 Da    PI: 4.5483
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736232genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.73.5e-30171381128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 
                lppGfrF+P d++lv eyL++kv ++++++   ++e++ ++v+PwdL      ++ke y+F+k+++++    rk r t sgyW++  + +ev++      
  676736232  17 LPPGFRFDPGDDDLVFEYLANKVLHRPMDF--DLPELRSCNVDPWDLL---GDKNKEAYYFVKKEERE----RKGRETLSGYWEECEE-EEVMEPgdrgC 106
                79*************************999..49*************6...557889******99875....899********98765.78888767666 PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                ++l g +kt++fy g++p+g+ t W+m e++l
  676736232 107 NHLEGRRKTFAFYIGKKPRGTITPWIMYEFQL 138
                677***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-326166IPR003441NAC domain
PROSITE profilePS5100531.98417167IPR003441NAC domain
PfamPF023656.5E-1818138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDISTQRFAM NGRSMRLPPG FRFDPGDDDL VFEYLANKVL HRPMDFDLPE LRSCNVDPWD  60
LLGDKNKEAY YFVKKEERER KGRETLSGYW EECEEEEVME PGDRGCNHLE GRRKTFAFYI  120
GKKPRGTITP WIMYEFQLLS SRATRWSSSP LPRGEVGKWR AVKVVVKEEN EEEIEEDEQA  180
SDESDGEEVV QSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-161513915143NO APICAL MERISTEM PROTEIN
1ut4_B3e-161513915143NO APICAL MERISTEM PROTEIN
1ut7_A3e-161513915143NO APICAL MERISTEM PROTEIN
1ut7_B3e-161513915143NO APICAL MERISTEM PROTEIN
4dul_A3e-161513915143NAC domain-containing protein 19
4dul_B3e-161513915143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736232
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747650.0KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199895.31e-118NAC domain containing protein 97
TrEMBLA0A178UQH21e-117A0A178UQH2_ARATH; NAC097
TrEMBLQ9FGQ11e-117Q9FGQ1_ARATH; NAC domain containing protein 97
STRINGAT5G50820.11e-117(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.16e-87NAC domain containing protein 97