PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736360
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CAMTA
Protein Properties Length: 1047aa    MW: 116498 Da    PI: 5.3847
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736360genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1148.61.5e-46111172104
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltl...elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                ++e ++rwlk+ e++ iL+n+e+++lt+   ++++rp+sgsl+Lyn++++++frkDG++w++kkdg+++ E+he+LKvg++e+l+cyYah+e++p+fqrr
  676736360  11 YQEaHSRWLKPPEVHFILQNHERYQLTQlthTPPQRPTSGSLLLYNKRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGSTEALNCYYAHGENDPSFQRR 110
                566699*******************99888899******************************************************************* PP

       CG-1  98 cywlLee 104
                +yw+L+ 
  676736360 111 IYWILDP 117
                *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.3777157IPR005559CG-1 DNA-binding domain
SMARTSM010766.6E-7010152IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-3913117IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.6E-8490580IPR013783Immunoglobulin-like fold
CDDcd001027.37E-6493578No hitNo description
SuperFamilySSF812963.27E-17493577IPR014756Immunoglobulin E-set
PfamPF018331.1E-8493576IPR002909IPT domain
Gene3DG3DSA:1.25.40.204.2E-15678774IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.088679771IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.4E-15681774IPR020683Ankyrin repeat-containing domain
CDDcd002041.16E-13684771No hitNo description
PfamPF127967.5E-7700772IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.553712744IPR002110Ankyrin repeat
SMARTSM002480.0051712741IPR002110Ankyrin repeat
SMARTSM002483300751780IPR002110Ankyrin repeat
SMARTSM0001517825847IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.986826855IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.2E-7826933IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152.8881903IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.279882911IPR000048IQ motif, EF-hand binding site
PfamPF006120.0075885902IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0015904926IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.865905929IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4907926IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1047 aa     Download sequence    Send to blast
MQSEYDISTL YQEAHSRWLK PPEVHFILQN HERYQLTQLT HTPPQRPTSG SLLLYNKRVL  60
KFFRKDGHQW RRKKDGRAIA EAHERLKVGS TEALNCYYAH GENDPSFQRR IYWILDPLSR  120
LLKNEISTNV EFIALYVREY EHIALVHYRD VSEPKEGKQT SGTVLQFSPN LSTLFSSQSS  180
IGTQNASYNH YIGDSTDMYQ QYSSTSPGNA EVNSDVVFKS NGTETPEGSG SSYEFENRQA  240
IKRLEEQLSL GDDIVNTVDP TYVLNESLDS LQFLDIEHLA QPATVQQRPE NSKLERCYGG  300
YVGAQYNANN GNPLYTQNES LDSLLSLECT EDINRLAQPA TGHQRPDSNR LERCYGGYIG  360
ADYHSNNLML VKNGSGGSGG SGDQKPESWK DVLEACDASI ALNSEGSTPS SAKGLLTGMQ  420
EDSNWSYSNQ ADQATLLLPQ ELGSSFELPA CYSVLGDSEN NAEYSRMMDD EGKTGLPLEQ  480
EMRPTVAYKQ KFTIQDVSPE WGYANETTKV IIIGLFLCDP TESTWSCMFG STEVPFEIIK  540
EGVIRCEAPP CGPGKVNLCI TSGDGLSCSQ IKEFEYRDKP DTSCPRCSRH ELNILVKFVR  600
TLLSDSKSNL EPGSDTLLKK LKADEDQWSH VIDTVLDGTA TSSSTLDWLL QELLKDKLDA  660
WLSSRSQDED QTSCSLSKQE QGIIHMVAGL GFEWALYPIL SHGVSVDFRD INGWSALHWA  720
ARFGSETMVA ALIASGASAG AVTDPNAEDP AGKTAASIAA SNGHKGLAGY LSEMALTNHL  780
SSLTLEETEI SKGSAQELAE MTMNSISGRS PPGNDDPHSL AALRNAAQAA ARIQAAFRAH  840
SFRKRQQREA ATAARYQEYG MYADIEGIAA MSKLAFGNAR NYNLAATSIQ KKYRGYKGRK  900
EFLAKRQKVV KIQAHIRGYQ IRKHYKVICW AVGVLDKVVL RWRRKGVGLK GFRQDVETTE  960
DSEDEDILKV FRKTKVDGAV NDAFARVLSM TNSPEARQQY HRVLKRYCQT KAELGKTETL  1020
GTDGGDDDYD SLFDIADMEY DNLFSLP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736360
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620826.10.0PREDICTED: calmodulin-binding transcription activator 4-like
RefseqXP_013671039.10.0calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A078IP550.0A0A078IP55_BRANA; BnaC02g45620D protein
STRINGBo2g055720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]