PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736438
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 275aa    MW: 30730.1 Da    PI: 4.2023
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736438genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.54.7e-101453140
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
               k+i n     +tfskR ng++ K +  + L+da++av+  
  676736438 14 KKITNRDSLATTFSKRTNGLFSKVSQFCLLTDAQIAVLFT 53
               5788888889***************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-11666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.432651IPR002100Transcription factor, MADS-box
CDDcd002668.09E-15751No hitNo description
SuperFamilySSF554551.44E-13779IPR002100Transcription factor, MADS-box
PfamPF003192.2E-111553IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVKRGGTKRK ATMKKITNRD SLATTFSKRT NGLFSKVSQF CLLTDAQIAV LFTPASSNSN  60
INFYSSSVNS IVNSIVNANL TGQRPVREET MRLEDEDSGI CMARKELGLG LWWEDDHLLQ  120
SEQNEATDET LIPANFNRAS QEQAQTLIPQ SYSNLNNMSE EQGKTLNFQS NSQNRCNPIL  180
LVTDLPADYN NVMTTEEQEQ IMVICGSFCA PENNYNSNVM TEEQDQIMAV CDTFSVSGIG  240
LEQFNDFNDL DINLDAAVFD AAFLDTTCTH EHKLD
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736438
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397046.11e-52agamous-like MADS-box protein AGL97
TrEMBLV4L4E22e-51V4L4E2_EUTSA; Uncharacterized protein
STRINGXP_006397046.14e-52(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.11e-37M-type_MADS family protein