PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676736604

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 441aa MW: 47730.4 Da PI: 9.3718

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676736604	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.5	1.1e-06	332	353	5	26
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r+rr++kNRe+A rsR+RK+ 676736604 332 RRQRRMIKNRESAARSRARKQN 353 79******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.0E-13	324	352	No hit	No description
SMART	SM00338	3.1E-5	328	424	IPR004827	Basic-leucine zipper domain
CDD	cd14707	9.44E-21	332	418	No hit	No description
PROSITE pattern	PS00036	0	335	350	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.0E-13	385	411	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MNFKNSSMGS EQPPGDGGGG GGGLTRPALT RQGSIYSLTF DEFQSSLGKD FGSMNMDELL 60 KNIWSAEETQ AMAMAASTSG VIPLPGGQEG LPLQRQGSLT LPRTLSTKTV DQVWKDLSKD 120 GNNGARGTNL TQSQSQSQNQ SQRQQTLGEV TLEEFLVRAG VVREEAQIAA KDKGGYFGND 180 ANTGFSVQAP QVVPGLMGNL GAETVNHMQV QGSSLPLNVN GARSTYQQPQ HQQPIMPKQP 240 GFAYGAQMSQ LNSPGIRGGL MGLGDQSLTN NMGLVQGGGA MGVGAVSPVT PLSSDGIGKN 300 NGDSSSLSPS PYMFNGGVRG RKSGTVEKVV ERRQRRMIKN RESAARSRAR KQNDSWSKYE 360 PSGFGVYTCC YPQMFTTDQN MYWNAYTVEL EAEVAKLKEE NEELQRKQAK IMEMQKNQEM 420 EMMNLQGGAK KRLRRTESGP W

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MNFKNSSMGS EQPPGDGGGG GGGLTRPALT RQGSIYSLTF DEFQSSLGKD FGSMNMDELL  60
KNIWSAEETQ AMAMAASTSG VIPLPGGQEG LPLQRQGSLT LPRTLSTKTV DQVWKDLSKD  120
GNNGARGTNL TQSQSQSQNQ SQRQQTLGEV TLEEFLVRAG VVREEAQIAA KDKGGYFGND  180
ANTGFSVQAP QVVPGLMGNL GAETVNHMQV QGSSLPLNVN GARSTYQQPQ HQQPIMPKQP  240
GFAYGAQMSQ LNSPGIRGGL MGLGDQSLTN NMGLVQGGGA MGVGAVSPVT PLSSDGIGKN  300
NGDSSSLSPS PYMFNGGVRG RKSGTVEKVV ERRQRRMIKN RESAARSRAR KQNDSWSKYE  360
PSGFGVYTCC YPQMFTTDQN MYWNAYTVEL EAEVAKLKEE NEELQRKQAK IMEMQKNQEM  420
EMMNLQGGAK KRLRRTESGP W

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676736604

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ971972	0.0	JQ971972.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 2 (ABF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024006262.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X3
Swissprot	Q9M7Q4	0.0	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A3N6PRI8	0.0	A0A3N6PRI8_BRACR; Uncharacterized protein
STRING	Bo6g006970.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.3	1e-179	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]