PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736814
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 432aa    MW: 47139.4 Da    PI: 7.7414
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736814genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.2e-06108129426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                + C+f+   G C +Gd+C++ H+
  676736814 108 KVCKFWVD-GNCTHGDKCRYLHC 129
                68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0112752IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.3522753IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.91E-7104128IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4108126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.8E-15127244IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.1E-5135174IPR001680WD40 repeat
SuperFamilySSF509781.28E-44135425IPR017986WD40-repeat-containing domain
PfamPF004000.005138174IPR001680WD40 repeat
PROSITE profilePS5029419.749142344IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.349142183IPR001680WD40 repeat
PRINTSPR003202.5E-6161175IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
SMARTSM003203.5214251IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.109.6E-30245425IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.054258295IPR001680WD40 repeat
PROSITE profilePS5008211.244265304IPR001680WD40 repeat
PRINTSPR003202.5E-6282296IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4298335IPR001680WD40 repeat
PfamPF004000.0046300334IPR001680WD40 repeat
PRINTSPR003202.5E-6322336IPR020472G-protein beta WD-40 repeat
SMARTSM003206.2339382IPR001680WD40 repeat
SMARTSM003203.4385422IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDYDLNGGNK RVFNRLGGPT RPTAPKNTRQ EVCYHWRAGR CYRNPCQFLH RELPGPVPSQ  60
GHHTNKRVAD ESGFAGPSHR RGPGFNGSSS SNTWGRFGGN RTVTKTEKVC KFWVDGNCTH  120
GDKCRYLHCW SKGDSFSLLT QLDGHEKLVS GIALPSGSDK LYTGSKDETM RVWDCASGQC  180
TSVLTLGAEV GCVISEGPWL LVGMPNLVKA WNIETNVDQS LSGPVGQVYS LVVGADLLFA  240
GTQDGSILAW RYNAATNCFE PAASLMGHTL AVVTLYVGAN RLYSGSMDKS IKVWSLDNLQ  300
CIQTLTDHTS VVMSLICWDQ FLLSCSLDNT VKIWAAIEGG NLEVTYTHKE EHGVLALCGV  360
HDAEAKPVLL CSCNDSTLRL YDLPSFTERG KIFAKQEIRS IQIGPGGIFF TGDGTGQVKV  420
WKWSTAPTAA MS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-211394288323Tako8
6g6n_A6e-211394288323Tako8
6g6n_B6e-211394288323Tako8
6g6n_C6e-211394288323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736814
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520640.0AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401881.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLV4LHV70.0V4LHV7_EUTSA; Uncharacterized protein
STRINGXP_006401881.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein