PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676736902

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 269aa MW: 31632.6 Da PI: 5.3194

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676736902	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.1	1.4e-12	35	106	27	98
---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 27 ggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++ ++++t+++ +sg++W ++++ s++++l++GWk+ vk+ +Lke f+vF++dg++ef ++ v++ 676736902 35 SSVTHLPRKVTVKSvSSGNVWIMEMTTtHDESDTVFLRDGWKKIVKDDNLKEPAFLVFEFDGSREF--HFCVYD 106 456778899***9999***775666677***********************9987777..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.04E-7	6	106	No hit	No description
SuperFamily	SSF101936	6.28E-14	8	107	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.096	11	108	IPR003340	B3 DNA binding domain
SMART	SM01019	2.1E-5	13	108	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.7E-11	14	106	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.3E-9	36	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.4E-5	201	268	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.87E-7	201	268	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MENINTQDSI RKVFRVYIPN VTDDDMDLPS FWDDSSVTHL PRKVTVKSVS SGNVWIMEMT 60 TTHDESDTVF LRDGWKKIVK DDNLKEPAFL VFEFDGSREF HFCVYDHGSM CKRMRSAMQT 120 EVVQVESDEE ESEETDEDDE TCDDEDMIVL DEESTEGLNE SLKRKERGGT SRRLSYLKTY 180 SDKFEEYLDN NLNPTFRINT SRHQTFIPRA LIKDYNLKFP KAVIVRDKFG KLKRKISVWK 240 NRTVIVNGFR SIMRRNHVNP RDKVVCELK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676736902

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875801.1	1e-100	B3 domain-containing protein REM22
Swissprot	Q9STF1	1e-100	REM22_ARATH; B3 domain-containing protein REM22
TrEMBL	D7LN48	8e-99	D7LN48_ARALL; Transcriptional factor B3 family protein
STRING	fgenesh1_pm.C_scaffold_5000849	1e-99	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16649	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46770.1	8e-99	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]