PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737384
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 97aa    MW: 11082.5 Da    PI: 9.8933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737384genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-071154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W+ +a+ +g g++++++k ++
        676737384 11 SWTFKQNKMFERALAVYDKDtpdRWHNVANAVG-GKSAEEVKRHY 54
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.144458IPR017877Myb-like domain
SMARTSM007172.7E-6860IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-121065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-41161IPR009057Homeodomain-like
CDDcd001678.40E-61254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASNSRSSSS SWTFKQNKMF ERALAVYDKD TPDRWHNVAN AVGGKSAEEV KRHYDILVED  60
LMNIETGRVP LPNYKAFESN SRGINGFDTR LMKNLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-33197192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737384
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894931e-106AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106182.12e-60PREDICTED: protein RADIALIS-like 6
RefseqXP_013590823.12e-60PREDICTED: protein RADIALIS-like 6
RefseqXP_013652446.12e-60protein RADIALIS-like 6
RefseqXP_013700871.12e-60protein RADIALIS-like 6
SwissprotQ1A1734e-60RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A397YRT94e-59A0A397YRT9_BRACM; Uncharacterized protein
STRINGXP_006390328.11e-55(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-57RAD-like 6