PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737432
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TALE
Protein Properties Length: 320aa    MW: 36410.3 Da    PI: 5.6387
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737432genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.5e-102562892154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                +n+yps +e+  LA+++gL+++qV +WF N R +
  676737432 256 ENSYPSDAEKLMLASQTGLSKNQVANWFINARVR 289
                79******************************88 PP
2BELL99.23.2e-3281152172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e++el++k++kLlsll++Vd+r+  y++ql++v+s Fe++ag gs+k+Yt lAl+a++rhF +L++ai +q+
  676737432  81 ENHELHIKITKLLSLLQQVDERFDIYCNQLEQVMSTFEEIAGEGSSKLYTGLALQAMTRHFGSLQEAILSQL 152
                689******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-1411150IPR006563POX domain
PfamPF075261.6E-2919148IPR006563POX domain
SMARTSM003895.5E-5202297IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-23207224IPR009057Homeodomain-like
CDDcd000861.82E-10255294No hitNo description
SuperFamilySSF466892.48E-13256301IPR009057Homeodomain-like
PROSITE profilePS5007111.353256293IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-23256299IPR009057Homeodomain-like
PfamPF059206.7E-13257289IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEEFSVTHEF ASLTSISLDS RYAKAVQCLL EEVIDIGGRE VDLCNDVLIQ QLFPGRRRSG  60
FRLSSEIKSE LCNSGFMSLP ENHELHIKIT KLLSLLQQVD ERFDIYCNQL EQVMSTFEEI  120
AGEGSSKLYT GLALQAMTRH FGSLQEAILS QLNSLRRRFI ISQDVVPKII SSGLSQLSLF  180
DRNTPSSLQR LGLVQGPQRH AWKPIRGLPE TSVAILRAWL FHHFLHPSVF SCCSSYINSG  240
DDVKCWRNNV LIYCNENSYP SDAEKLMLAS QTGLSKNQVA NWFINARVRL WKPMIEEMYK  300
EEFGDSSDES MQREGNDDSN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894930.0AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.
GenBankAC1895860.0AC189586.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012I05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649901.10.0BEL1-like homeodomain protein 11
RefseqXP_013710380.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-178BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A078IEG80.0A0A078IEG8_BRANA; BnaAnng09210D protein
TrEMBLA0A397YRV60.0A0A397YRV6_BRACM; Uncharacterized protein
STRINGBo6g119610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-180BEL1-like homeodomain 11