PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737450
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 124aa    MW: 13677.4 Da    PI: 9.2792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737450genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-174186251
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51
                ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++ a++
  676737450 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDSAAQ 86
               69****999.**********8...3.35*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.82E-244096No hitNo description
SMARTSM003802.4E-2241100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-254187IPR001471AP2/ERF domain
PROSITE profilePS5103218.5184185IPR001471AP2/ERF domain
PfamPF008471.3E-134186IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-184189IPR016177DNA-binding domain
PRINTSPR003673.5E-104253IPR001471AP2/ERF domain
PRINTSPR003673.5E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPENASC TYKGVRQRTW GKWVAEIREP  60
NRGARLWLGT FDTSREAALA YDSAAQATMS LGFPWVHEGD DDISPFNTCI SGGYSNWDSF  120
HSPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-144285650ATERF1
3gcc_A1e-144285650ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737450
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895861e-117AC189586.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012I05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887600.21e-54dehydration-responsive element-binding protein 2D
RefseqXP_006302829.11e-54dehydration-responsive element-binding protein 2D
RefseqXP_010428577.12e-54PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ22e-55DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLR0GIK83e-53R0GIK8_9BRAS; Uncharacterized protein
STRINGCagra.0799s0022.1.p6e-54(Capsella grandiflora)
STRINGXP_006302829.15e-54(Capsella rubella)
STRINGXP_010428577.16e-54(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.17e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]