PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676737456

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

SRS

Protein Properties

Length: 225aa MW: 25249.5 Da PI: 8.6689

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676737456	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	124.5	1.3e-38	114	190	2	78
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel 78 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+th+kstWvpaakrrer +qla++++++a+s+++++++ kr 676737456 114 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHIKSTWVPAAKRRERLAQLASLQHHSASSRETQNANAKRLR 190 7899********************************************************99998855554444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.0E-35	117	192	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.9E-28	119	161	IPR006510	Zinc finger, lateral root primordium type 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MAGFFYLGGR DNNNNKQDHH QVEKDHHHQD KSNYLYLYKD EIYNTNKGFE IWPPQYFQQQ 60 QEQQQHATAP ANFYSFGMVP SGSSSSNNNN NNRSRSLYFN VVSDHEPGGF TVTRQGGMNC 120 QDCGNQAKKD CPHMRCRTCC KSRGFHCQTH IKSTWVPAAK RRERLAQLAS LQHHSASSRE 180 TQNANAKRLR EANGGDNDDK DHSGGGGGSA LVTRVVNANS DSGII

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676737456

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189586	0.0	AC189586.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012I05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177684.1	1e-130	SHI-related sequence 5
Swissprot	Q9LQZ5	1e-131	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A178W9B5	1e-129	A0A178W9B5_ARATH; SRS5
STRING	AT1G75520.1	1e-130	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-118	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]