PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676737664

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C2H2

Protein Properties

Length: 452aa MW: 50392 Da PI: 8.5564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676737664	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H 676737664 77 FICEICNKGFQRDQNLQLHKRGH 99 89******************988 PP
2	zf-C2H2	14.2	0.00012	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ 676737664 154 WKCEKCSKKYAVQSDWKAHAKTC 176 58******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.44E-6	76	99	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.7E-6	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.022	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.803	77	99	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.9E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-4	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.44E-6	149	174	No hit	No description
SMART	SM00355	140	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MSNLTSASGD QASVSSGNRT ETSGSNFHYN INPTQQQEQC FVQQSSLKKK RNQPGNPDPE 60 AEVMALSPKT LMATNRFICE ICNKGFQRDQ NLQLHKRGHN LPWKLKQRSS KDVIRKKVYV 120 CPEPSCVHHH PSRALGDLTG IKKHFFRKHG EKKWKCEKCS KKYAVQSDWK AHAKTCGTKE 180 YKCDCGTLFS RRDSFITHRA FCDALAEESA RAIPNPILNI QSSSSPPTPH HHHQIQQNIN 240 FSSSSQNIIS NNNLHGHEFH MKQEEPHHHF QNIPPWLASS NPNPNGNNGN FFPLASSSTT 300 TGRSNFHHPS PAMSATALLQ KAAQMGPTKS ATTPEEEEKS SSRPNAAYNN LITTTMAAAM 360 MTPPSEPVFG FQDYYMMNHH PHHQGVGEAF NGGFIAGDEK NDVADDGGGE TRDFLGLRSL 420 MSHNEILSFA NNLGNCIHTS AAERQQQYSH QD

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MSNLTSASGD QASVSSGNRT ETSGSNFHYN INPTQQQEQC FVQQSSLKKK RNQPGNPDPE  60
AEVMALSPKT LMATNRFICE ICNKGFQRDQ NLQLHKRGHN LPWKLKQRSS KDVIRKKVYV  120
CPEPSCVHHH PSRALGDLTG IKKHFFRKHG EKKWKCEKCS KKYAVQSDWK AHAKTCGTKE  180
YKCDCGTLFS RRDSFITHRA FCDALAEESA RAIPNPILNI QSSSSPPTPH HHHQIQQNIN  240
FSSSSQNIIS NNNLHGHEFH MKQEEPHHHF QNIPPWLASS NPNPNGNNGN FFPLASSSTT  300
TGRSNFHHPS PAMSATALLQ KAAQMGPTKS ATTPEEEEKS SSRPNAAYNN LITTTMAAAM  360
MTPPSEPVFG FQDYYMMNHH PHHQGVGEAF NGGFIAGDEK NDVADDGGGE TRDFLGLRSL  420
MSHNEILSFA NNLGNCIHTS AAERQQQYSH QD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	150	211	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-36	150	211	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	116	KLKQRSSKDVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676737664

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352994	0.0	AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106906.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_013740522.1	0.0	protein indeterminate-domain 7-like isoform X1
Refseq	XP_018509298.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	0.0	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3P6BBU9	0.0	A0A3P6BBU9_BRACM; Uncharacterized protein
TrEMBL	M4EQ15	0.0	M4EQ15_BRARP; Uncharacterized protein
STRING	Bra030886.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	0.0	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]