PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737684
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 544aa    MW: 59602 Da    PI: 5.1342
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737684genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.8e-16135221186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ +++Li+a  ++ ++ ++g lk+++W+ev++ +   r+ ++ ++ +qCk++++ ++k+yk++k+   ++  +  s++++f++le
  676737684 135 CWSEEATRVLINAWGDRFSEPGKGTLKQQQWKEVAEIVnesRQCKYPKTDIQCKNRIDTVKKKYKQEKAKVASG--DGPSKWVFFKKLE 221
                7*************************************98888999**************************98..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-23134222No hitNo description
PfamPF055641.2E-5433474IPR008406Dormancy/auxin associated protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
KNDGYFGKFN KTNRVNNGDD SSSGDLIPSP VRRSKISDLS NFLSNPFLRI SKFTMEEEDE  60
THSPQSPVDT SSPQQQASAP PPIVPDVTVA SVTKPSPLTS QSPSLALVVH TPSGGITGSS  120
RNGRSGSGGG GRDDCWSEEA TRVLINAWGD RFSEPGKGTL KQQQWKEVAE IVNESRQCKY  180
PKTDIQCKNR IDTVKKKYKQ EKAKVASGDG PSKWVFFKKL ETLIGGGGGG GNKSSDKAPM  240
GVLMSNRSSL YRRQAKGPPQ VLQQRGSDSM RWHFRKRSAS ETESESEPEP EPELEASHES  300
GESLPPLQPV SFQLTKRLKV DNNKSGGSGV GEVAKAIVGF TEAYEKAETA KLKLMLELEK  360
ERMKFAKEIE LQRMQFLKTQ MEMTQNNQEE DEEEEEEEEG RSKRGERRVL DGGDDDDDDD  420
DDDDRNVKNN GDLWDDTVAG PAPESGLGKL RKHESLLLPT VQSPPLSSDQ VTRSIIVTKG  480
NNNVRGLRKL KMDPGRAPDS PTGSTGTPCD NFGPFSADKI PSAGEADAAS LTTYEWIVIN  540
ALDR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529219e-88AK352921.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645080.11e-150trihelix transcription factor ASIL1
SwissprotQ9SYG21e-142ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A0D3CQV41e-174A0A0D3CQV4_BRAOL; Uncharacterized protein
STRINGBo6g033010.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.11e-1046B-interacting protein 1-like 1