PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737728
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 453aa    MW: 51140.1 Da    PI: 4.7698
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737728genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07395420228
                      SSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIa 28 
                      + WT+eE e l ++vk++G+  Wk I 
        676737728 395 KFWTPEEVEALREGVKEYGKA-WKDIK 420
                      67*****************99.**996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.36E-7391435IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-7391430IPR009057Homeodomain-like
CDDcd116607.06E-8395437No hitNo description
PfamPF139215.8E-5397422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEVIDRWVAE FFIRRQGNPR VSPISLLSAL KVGDSPDCIK LKISSVLRDI SNSLIRSTID  60
EGMLDLLEML EKLLLQQQHH SLLMESHKSA YCWTAVECTL RFMWPLDASD GLLTDAIERI  120
WTKRIGNLKE SGSGLVTSDL LKWETDVKKA LEDPELYQRI RETNIRYTSV SFLTQLLKEQ  180
WALLGSSSLE SVAQRTFLKR KAENNVDGDL VRSRGDPNAV DESTRRLESE NIDSANERRG  240
TGEGEDGNGN NRDVEGVGCL EHDEQHAADE EQTMGAQEQE HEPSLDKGDK TAARELKDYL  300
LEIQRQIDLS TRQLQEPNNA IDHSVDVTPQ PARVNRTGTS GQDHNEESQQ NNVSEKSSGS  360
RGTWSGRVRP RLPTPELLSV SPLKKASTPV RRPKKFWTPE EVEALREGVK EYGKAWKDIK  420
NANPAIFAER TELCLSDNCE EDGGESVFDI FVW
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737728
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401097.20.0uncharacterized protein LOC18018067 isoform X1
TrEMBLV4KX450.0V4KX45_EUTSA; Uncharacterized protein
STRINGXP_006401097.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein