PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676737852

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 298aa MW: 33798.5 Da PI: 4.369

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676737852	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.9	5.9e-16	11	101	3	98
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 v ++d + s+rl lp ++++ + k+ ++t +l+ ++g+ W+vk +k++++ + +++GW++F +n+ +gDf++F +dg+++f +v++fr 676737852 11 IVYNSHDLSLSQRLALPSDHTKYYP--KPLPQTAVLRKPEGNFWTVKW--TKSQDEtTGFEDGWSKFITDNDPIDGDFILFAYDGSRSF--FVSMFR 101 5554556666799******6665..56999************..777666699***********************98777..898887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.49E-19	5	101	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.0E-18	6	101	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.77E-16	7	101	No hit	No description
PROSITE profile	PS50863	13.493	9	103	IPR003340	B3 DNA binding domain
SMART	SM01019	7.6E-17	9	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-14	9	101	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MVFTPYPDFF IVYNSHDLSL SQRLALPSDH TKYYPKPLPQ TAVLRKPEGN FWTVKWTKSQ 60 DETTGFEDGW SKFITDNDPI DGDFILFAYD GSRSFFVSMF RDGLPVKPKA PVKIQEISDD 120 DEDETTGSDD DDDDDDDDYH DMEKEEDNDQ NMITSLSLGS SDEDDADTAV GEVKKAQSSR 180 KGGSSQKKRA EAIGDPEMYL DDPTNPCFIA ASTCRPVLVI ATQVIKDYDL KFGSTIRFID 240 RFGELEGKLG EWKDGRTVVR RWEEIYKRNN AKPEGLIICE ILRQGGVVRS IKAHFVKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676737852

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126820.1	1e-148	PREDICTED: B3 domain-containing protein At5g57720-like
Swissprot	Q9FHH1	1e-103	Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBL	A0A078JII4	1e-146	A0A078JII4_BRANA; BnaA02g35370D protein
STRING	Bra020417.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13797	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57720.1	5e-88	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]