PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738006
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 621aa    MW: 68086.3 Da    PI: 5.0928
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738006genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08262282526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C++Gd+C +aHg
  676738006 262 PCPEFRK-GSCSRGDSCEYAHG 282
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.8E-139165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.6E-1411164IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-852126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.62857132IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00345787IPR002110Ankyrin repeat
CDDcd002044.01E-1259132No hitNo description
SMARTSM002480.04792124IPR002110Ankyrin repeat
PROSITE profilePS500889.21792127IPR002110Ankyrin repeat
SMARTSM003562.5E-5257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4261284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619262284IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-6262282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4290320IPR000571Zinc finger, CCCH-type
SMARTSM0035620292315IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221292316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGDDELSHLK FSLLLESAAC NDLSGFKSLI EEEGLESIDR SGLWYGRRLG SKKMGFEERT  60
PLMVAALFGS KEIVHYIIST GLVDVNRSCG SDGATALHCA VSGLSANSLD VVTLLRNGSA  120
DPDARDASGN KPADMIFPCL SPVFSARKKV LERLLNGSND LNEADVQEEE EREEEREVEV  180
EVEVSVSVSP PRGSERKEYP VDPTLPDIKN GIYGTDEFRM YAFKIKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYHYSC VPCPEFRKGS CSRGDSCEYA HGIFECWLHP AQYRTRLCKD  300
ETNCSRRVCF FAHKPEELRP LYPSTGSGVP SPRSSFSSCN SSAFDMGPIS PLPPLSPNGV  360
STTPPLSPNG VASPIGGGKP WMNWPSATPP ALQLPGSRLK SALNAREIDF SEEMQSLSSP  420
ARWNNNTPVL AASPPFSGKG MNRLAGGGMS PVNSLSDMFG TDDNMSGLQM RRINSQLHSS  480
SLSSSPVGTN SQFLMDSSTP LASRAAAFSQ QRSQSFIERT NGLNHQYPAI SSMSTTCLTD  540
WGSLDGKLDW SVNGDELQKL KESTSFRLRA GGMESRVPME GTGLEEPDVS WVEPLVKEPQ  600
ETRLAPVWME QSYMETEQTV A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483463.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLV4LRP40.0V4LRP4_EUTSA; Uncharacterized protein
STRINGBostr.26833s0388.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein