PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676738286

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 203aa MW: 22516.6 Da PI: 5.0354

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676738286	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.9	3.1e-42	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r da++slvyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ e 676738286 31 PCAACKILRRRCGEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRIDAVNSLVYEAGARIRDPVYGCAGAIYNLQRQVSELQAQLAKAQVE 130 7**********************************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.228	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-42	31	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MESNGEAAAA IISASPTSSP PPPLSPRVLS PCAACKILRR RCGEKCVLAP YFPPTEPAKF 60 TIAHRVFGAS NIIKLLQELP ESQRIDAVNS LVYEAGARIR DPVYGCAGAI YNLQRQVSEL 120 QAQLAKAQVE IVSMQFQRSN LLELIHNMDQ PNQEQRNMSF KSSFGNCDDF ISSPDEDSND 180 FGFLEDKYSN TKSSMLWCDP LWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-43	23	132	3	112	LOB family transfactor Ramosa2.1
5ly0_B	8e-43	23	132	3	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676738286

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473841	1e-138	AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480879.1	1e-131	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 1-like
Swissprot	Q9SK08	1e-100	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A3P5YC28	1e-120	A0A3P5YC28_BRACM; Uncharacterized protein
STRING	Bra018675.1-P	1e-120	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-103	LOB domain-containing protein 11