PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738304
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YC
Protein Properties Length: 195aa    MW: 22019.6 Da    PI: 8.4219
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738304genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.32.2e-15901771299
      NF-YC  12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 ++d k  ++P+ ri++i+++d+   +i  +a  l+ ka e+fi  ++  ++  + + k++ ++   ++++v++ + ++fl d vp++
  676738304  90 GVEDAKMFRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYETSVQDKKKFIHYKHLSSVVSNDERYEFLADCVPEK 177
                56789999*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.98E-2097176IPR009072Histone-fold
PfamPF008081.1E-2198161IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.2E-2499176IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVSSKKPKSD GVNKAGGRNT RSSGPKTKKN TANKMNSKGI AKKEPEVYEI SESSSSDSVE  60
EARRDEPNGV VVSKDRNGRR KNGEEEDGGG VEDAKMFRFP MNRIRRIMRS DNSAPQIMQD  120
AVFLVNKATE MFIERFSEEA YETSVQDKKK FIHYKHLSSV VSNDERYEFL ADCVPEKLKA  180
EVALEEWERG MTDVG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290111e-106AK229011.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-31-C07.
GenBankAK2292661e-106AK229266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-54-O22.
GenBankAY0868151e-106AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence.
GenBankBT0252661e-106BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645785.18e-99nuclear transcription factor Y subunit gamma
TrEMBLA0A1J3HC742e-93A0A1J3HC74_NOCCA; Chromatin accessibility complex protein 1
STRINGCagra.1637s0006.1.p1e-97(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-67nuclear factor Y, subunit C10