PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738422
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TALE
Protein Properties Length: 602aa    MW: 68918.4 Da    PI: 7.0209
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738422genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.6e-094094461954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  676738422 409 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 446
                554459******************************88 PP
2BELL1024.4e-33267338172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e++elqk+kakLl +lee+++rY +y+eq++  +++Fe ++g+g+a+ Yt+lA++a+SrhFrcLkd +++qi
  676738422 267 EFMELQKRKAKLLAMLEELKRRYGHYREQMRLAAAAFESAVGVGAAETYTALASRAMSRHFRCLKDGLVGQI 338
                679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.1E-41193334IPR006563POX domain
SMARTSM005742.1E-65199336IPR006563POX domain
PROSITE profilePS5007112.017387450IPR001356Homeobox domain
SMARTSM003895.6E-9390454IPR001356Homeobox domain
CDDcd000862.58E-10390451No hitNo description
SuperFamilySSF466892.95E-17391457IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-28393457IPR009057Homeodomain-like
PfamPF059207.9E-18407446IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MTRDQFYGHN STDHHHRQQQ HQMINQIQGF DETNQNTTDH HQQQQQQQHR YHHQIFGSNS  60
NMGMMIDFSK QHQIRMDHHH HHQTSGGTDQ NQLLEDSSFS MRLCNVNNDF SSEVNDERLP  120
QRPSQGLSLS LSSSNPTSIS LQSFDLRHQQ QEQQGYSGKS THHQNLQHSQ MMMMMMNSQQ  180
QNHNNNNHHQ FQIGSSKYLS PAQELLSEFC SLGVKESDDE VMMMKHKRKQ KGKQQEEWDT  240
SNNNNDQQDQ SATTSSKKHV PPLHSLEFME LQKRKAKLLA MLEELKRRYG HYREQMRLAA  300
AAFESAVGVG AAETYTALAS RAMSRHFRCL KDGLVGQIQA TSQALGERDE DNRGVSIAAR  360
GETPRLRLLD QALRQQKSYR QMSLVEAHPW RPQRGLPERA VTTLRAWLFE HFLHPYPSDV  420
DKHILARQTG LSRSQVSNWF INARVRLWKP MIEEMYCEET RGEEQMEITN QMFIDTKPDP  480
NQIMRVEPES LSSIVTKTGH KDNNNQGTAS FGSTFDFSSY GNQAVTYTGE GGARDVSLTL  540
GLQNGGVSLA LSPVTAQGGP LYYGRDHMEG SVQYTASMLD DDQAQNLPYR NLMGAQLLHD  600
MV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15396454563Homeobox protein Meis2
3k2a_B3e-15396454563Homeobox protein Meis2
4xrm_A4e-15396454563Homeobox protein Meis2
4xrm_B4e-15396454563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738422
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528660.0AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637027.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A3P6CG880.0A0A3P6CG88_BRAOL; Uncharacterized protein
STRINGBo4g142080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]