PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738748
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 224aa    MW: 25338.7 Da    PI: 8.6618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738748genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83.1e-11107153354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +a n++E+rRR +i++++e+L++l P++     kK + a++L   +++I+s+
  676738748 107 EARNIAEKRRRTDIKTKIENLKQLTPNC-----KKRDIASTLDCIIDHIRSM 153
                578*************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-12101163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11101161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.132104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-9107155No hitNo description
PfamPF000104.9E-8108153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-9110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNNDQGSIQF WSTLLQSLAY SDPKNDPDIS SPILVMSTST ATDTSSDRSN APGDGDKTGP  60
RKAIAKTKDE NINEGGQIYI GKRIEVEKTE NEKEEIKNLG KRERTNEARN IAEKRRRTDI  120
KTKIENLKQL TPNCKKRDIA STLDCIIDHI RSMKHYVERH SMGPMLPLGM EMDFPAPWYP  180
FIHPNYIMPP FNGFTPGETS ADNQRILPVT TKVHNQQIVP TTKV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022568090.11e-101putative transcription factor bHLH056 isoform X1
TrEMBLA0A3P6BJX15e-99A0A3P6BJX1_BRACM; Uncharacterized protein
STRINGBo6g097200.12e-99(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1574077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.14e-14bHLH family protein