PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738800
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 134aa    MW: 15652.6 Da    PI: 7.5112
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738800genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.75.3e-1341101363
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                + ++ rrk +NRe+ArrsR RKk+ + eL    + L +eNk L +e+++  + ++++  e+
  676738800  41 DEQKRRRKVSNRESARRSRMRKKQHLNELWSMLAHLVNENKCLVDEVSRAYEAYENVIEEN 101
                56789********************************************999999876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-113392No hitNo description
SMARTSM003387.6E-1339103IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.62241104IPR004827Basic-leucine zipper domain
PfamPF001705.9E-1043100IPR004827Basic-leucine zipper domain
CDDcd147022.34E-154494No hitNo description
SuperFamilySSF579593.88E-114494No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDGFVYNLQC ANPNPQFLDN LVPRVNLSST SDESSRSAED DEQKRRRKVS NRESARRSRM  60
RKKQHLNELW SMLAHLVNEN KCLVDEVSRA YEAYENVIEE NKKLQEETSK SRKMIGEIGL  120
HRFLNVEGDQ ILTI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177054.13e-59basic leucine-zipper 8
SwissprotQ9CA463e-60BZIP8_ARATH; Basic leucine zipper 8
TrEMBLA0A0D3AP402e-57A0A0D3AP40_BRAOL; Uncharacterized protein
TrEMBLA0A3N6T1912e-57A0A3N6T191_BRACR; Uncharacterized protein
STRINGAT1G68880.11e-58(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.11e-52basic leucine-zipper 8
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]