PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739150
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 184aa    MW: 19838.4 Da    PI: 10.5169
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739150genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.9e-183872135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ Cgt  TplWR gp g+k+LCnaCG++ rkk++
  676739150 38 CVDCGTNRTPLWRGGPAGPKSLCNACGIKSRKKRQ 72
               *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.0043268IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-103282IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-113371No hitNo description
Gene3DG3DSA:3.30.50.103.1E-143672IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.63E-103771No hitNo description
PfamPF003201.4E-153872IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403863IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTEETKTTTK LESAGDSSDA ENGNCSSSGS GGDTKKTCVD CGTNRTPLWR GGPAGPKSLC  60
NACGIKSRKK RQAALGIRSE DIKIKNKSNN NLALDNHTVK SDNQTVKNGK GDSGNVKNRI  120
KTTTDAENYN SSGNKKIVKR ASRFLDLGFK VPAMKRSAVE KKRLWRKLGE EERAAVLLMT  180
LSCG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190213e-82AK119021.1 Arabidopsis thaliana At4g16141 mRNA for unknown protein, complete cds, clone: RAFL21-34-K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414388.11e-86GATA transcription factor 17
SwissprotQ9LIB51e-60GAT17_ARATH; GATA transcription factor 17
TrEMBLV4P8913e-85V4P891_EUTSA; Uncharacterized protein
STRINGBostr.30275s0055.1.p8e-97(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138161624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.13e-78GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]