PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676739168

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

CAMTA

Protein Properties

Length: 920aa MW: 104730 Da PI: 7.2648

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676739168	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.6	7.3e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf rrcywl 676739168 30 EEaYSRWLRPNEIHALLCNHKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFVRRCYWL 129 55589********************************************************************************************* PP CG-1 102 Leeelekivlvhylevk 118 L++++e+ivlvhy+e++ 676739168 130 LDKSKEHIVLVHYRETH 146 ************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.347	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-74	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.1E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.49E-13	372	458	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.17E-13	558	668	No hit	No description
Pfam	PF12796	9.7E-7	559	638	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.4E-15	559	671	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.26E-15	567	674	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.761	576	641	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.808	609	641	IPR002110	Ankyrin repeat
SMART	SM00248	2.7E-6	609	638	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.181	758	784	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	330	773	795	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.9E-4	796	818	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.347	797	821	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	872	894	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.279	873	902	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MAGVDSGRLI GSEIHGFHTL QDLDIQTMME EAYSRWLRPN EIHALLCNHK YFTINVKPVN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSKEHIVLV HYRETHEVQA APATPGNSYS SSITDHLSPI PVAEDINSGV 180 RNACNTGFEA RDNSLVAKSH EIRLHEINTL DWDELLVSAD SQCLPTEEDV LYFTDQLETA 240 PRGSAKPGNH LVGYNASTDL PSFLGLGDPV YQNNNPCGAR EFSSQHLHCV VDPNLQRRDS 300 TEMVADEPGD ALLNNGYGSQ ESFGKWVNNF ISDSPGSVED PSLEAVFTPG QESSAPPAVL 360 HSQSNIPEQV FNITDVSPAW AYSTEKTKIL VTGFFHDSFQ HFGRSNLFCI CGELRVPAEF 420 LQMGVYRCFL PPQSPGVVNL YLSADGNKPI SQLFSFEHRS VPVIEKVVPQ EDQLYKWEEF 480 EFQVRLAHLL FTSSNKINVF ASKISPDNLL EAKKLASRTS HLLNSWAYLM KSIQANEVPF 540 DQARDHLFEL TLKNRLKEWL LEKVIENRNT KEYDSKGLGV IHLCAVLGYT WSILLFSWAN 600 ISLDFRDKHG WTALHWAAYY GREKMVAALL SAGARPNLVT DPTKEFLGGC TAADLAQQKG 660 YEGLAAFLAE KCLIAQFEDM RLAGNISGNL EAIKAETSTN PGHSNEEEQS LKDTLAAYRT 720 AAEAAARIQG AFREHELKVR SNAVRFASKE EEAKNIIAAM KIQHAFRNYE TRRKIAAAAR 780 IQYRFQTWKI RREFLNMRKK AIRIQAAFRG YQVRRQYQKI TWSVGVLEKA ILRWRLKRKG 840 FRGLQLSQPE EKEGTEVVED FFKTSQKQAE DRLERSVVRV QAMFRSKKAQ QDYRRMKLAH 900 EQAQLEYDGM QEFDEMAMES

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MAGVDSGRLI GSEIHGFHTL QDLDIQTMME EAYSRWLRPN EIHALLCNHK YFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSKEHIVLV HYRETHEVQA APATPGNSYS SSITDHLSPI PVAEDINSGV  180
RNACNTGFEA RDNSLVAKSH EIRLHEINTL DWDELLVSAD SQCLPTEEDV LYFTDQLETA  240
PRGSAKPGNH LVGYNASTDL PSFLGLGDPV YQNNNPCGAR EFSSQHLHCV VDPNLQRRDS  300
TEMVADEPGD ALLNNGYGSQ ESFGKWVNNF ISDSPGSVED PSLEAVFTPG QESSAPPAVL  360
HSQSNIPEQV FNITDVSPAW AYSTEKTKIL VTGFFHDSFQ HFGRSNLFCI CGELRVPAEF  420
LQMGVYRCFL PPQSPGVVNL YLSADGNKPI SQLFSFEHRS VPVIEKVVPQ EDQLYKWEEF  480
EFQVRLAHLL FTSSNKINVF ASKISPDNLL EAKKLASRTS HLLNSWAYLM KSIQANEVPF  540
DQARDHLFEL TLKNRLKEWL LEKVIENRNT KEYDSKGLGV IHLCAVLGYT WSILLFSWAN  600
ISLDFRDKHG WTALHWAAYY GREKMVAALL SAGARPNLVT DPTKEFLGGC TAADLAQQKG  660
YEGLAAFLAE KCLIAQFEDM RLAGNISGNL EAIKAETSTN PGHSNEEEQS LKDTLAAYRT  720
AAEAAARIQG AFREHELKVR SNAVRFASKE EEAKNIIAAM KIQHAFRNYE TRRKIAAAAR  780
IQYRFQTWKI RREFLNMRKK AIRIQAAFRG YQVRRQYQKI TWSVGVLEKA ILRWRLKRKG  840
FRGLQLSQPE EKEGTEVVED FFKTSQKQAE DRLERSVVRV QAMFRSKKAQ QDYRRMKLAH  900
EQAQLEYDGM QEFDEMAMES

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676739168

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013711273.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A3P6GMJ4	0.0	A0A3P6GMJ4_BRAOL; Uncharacterized protein
STRING	Bo8g043280.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]