PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676739436

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 213aa MW: 24317.3 Da PI: 8.416

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676739436	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97	2.9e-30	5	77	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + ++ g+kk Lvfy g+apkg kt+W+mheyrl 676739436 5 GEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGK--PKTLGIKKALVFYAGKAPKGIKTNWIMHEYRL 77 579**********************************98..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.428	1	105	IPR003441	NAC domain
SuperFamily	SSF101941	6.28E-36	3	105	IPR003441	NAC domain
Pfam	PF02365	1.1E-14	9	77	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MALYGEKEWY FFSHRDRKYP NGSRPNRAAG TGYWKATGAD KPIGKPKTLG IKKALVFYAG 60 KAPKGIKTNW IMHEYRLANV DRSASTNKKN NLRLDDWVLC RIYNKKGTME KYYPADEKPT 120 AMMTTSTSDS KCSSHVISPD VTCSDNWEVQ SESKWVDLED AFDAFDTSMF GSIELLQNDS 180 FVPQFPYQSD FAISFQDPPE QKPFLNWSFA PQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-51	2	111	64	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676739436

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394242.1	1e-144	NAC domain-containing protein 102
Swissprot	Q8H115	1e-136	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	V4KVX9	1e-143	V4KVX9_EUTSA; Uncharacterized protein
STRING	XP_006394242.1	1e-143	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	1e-138	NAC domain containing protein 102

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]