PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739534
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CAMTA
Protein Properties Length: 1071aa    MW: 119488 Da    PI: 6.49
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739534genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11277.6e-406513736108
       CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelek 108
                 gsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fqrrcyw+Le+   +
  676739534  65 GGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQRRCYWMLEHFSAD 137
                69*****************************************************************975332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143757.67937164IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-4940159IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-3165142IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.4E-15488574IPR014756Immunoglobulin E-set
PfamPF018335.1E-4488562IPR002909IPT domain
PROSITE profilePS5029710.365671720IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.45E-8672771IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-8672772IPR020683Ankyrin repeat-containing domain
CDDcd002047.20E-6677769No hitNo description
PROSITE profilePS500889.351688720IPR002110Ankyrin repeat
SMARTSM000150.64884906IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.19E-7885934IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95885914IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021886905IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092907929IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.413908932IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4910929IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1071 aa     Download sequence    Send to blast
MIQQKDTHMH KIPSVYPRIS SSCCPKHNTG GLGLLRFVRF FGTIRSFILR QSLPTDHPTF  60
RALLGGSLFL FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSIDVL HCYYAHGEDN  120
ENFQRRCYWM LEHFSADVLC FYGYRDLMHI VFVHYLEVKG NRVSSSGIRE KNSNSLSGSA  180
SVNIDSTATP SSALSPLCED ADSGDSRQAS SSLQANREPQ TVASQIRHQQ NANTINSYNP  240
TSTLGNRGGW PSAPGIGFVS QVHGNRVKES DSQRSVGVPA WDASFENPLA RYQNLPYNAL  300
LTQTQPPSAG LIPVEGNTEK GSLLTAEHRR NPLQNEVNWQ VPVQDSLPSQ KWSMDSHSAM  360
ADDTDLALHE NFGTFSSLLG NQNQQLIGGS FQAPFTSTEA AYIPKLGPED LLYEASANQS  420
LPLRKSLLKK EDSLKKVDSF SRWVSNELSE MEDLHMQSSS GGLAWTSVET AAAASSLSPS  480
LSEDQRFTII DFWPKWSQTD SEVEVMVIGT FLLSPQEVSS YSWSCMFGEV EVPAEILVDG  540
VLCCHAPPHE VGQVPFYITC SDRFSCSEVR EFDFLPGSAK KLNTADIYGA FTNEASLHLR  600
FENLLARISS VQEQHIFEDV GEKRRKISRI MLLKEEKDTL FPGTVVKDPT ELEAKERLIR  660
EEFEDKLYLW LIHKVTEEGK GPNILDEEGQ GVLHLAAALG YDWAIKPILA AGVSINFRDA  720
NGWEDTVALL VSLGADSGAL TDPSPELPLG KAASDLAYGN GHRGISGFLA ESSLTSYLEK  780
LTVDAKENSS ADSSRAKAVQ TVAERTATPM SDGDVPETLS MKDSITAVFN ATQAADRLHQ  840
VFRMQSFQRK QLSEFGDNEF DISDELAVSF AAAKTKKPGH SSGAAHAAAV QIQKKYRGWK  900
KRKEFLLIRQ RIVKIQAHVR GHQVRKQYRT IIWSVGLLEK IILRWRRKGS GLRGFKRDTI  960
TKAPEPVCAP PQEDDYDFLK EGRKQTEERL QKALTRVKSM AQYPEARAQY RRLLTVVEGI  1020
RENEASSSSA MNNNNNNNSN TEEAANYNKE DDLIDIDSLL DDDTFMSLAF E
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739534
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938110.0AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220.
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394184.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1J3JZU70.0A0A1J3JZU7_NOCCA; Calmodulin-binding transcription activator 2
STRINGXP_006394184.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]