PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739736
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 871aa    MW: 88631.5 Da    PI: 5.7098
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739736genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.73.5e-2066118154
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                kp+l+Wt+ L ++F +a++++ G +kAtPk+il  m+++ Lt++hv+S LQkYR
  676739736  66 KPKLKWTESLENHFCKAIQHI-GVHKATPKKILAYMDLNYLTRAHVASKLQKYR 118
                79*******************.9******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.55463122IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2064123IPR009057Homeodomain-like
SuperFamilySSF466891.29E-1264123IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1866119IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MNNEIEQETL TSGAMGSMTE PIKPNDLNIS SEHASNPKTN DSLKEIQTDS TSKPDDGDSQ  60
PEAKTKPKLK WTESLENHFC KAIQHIGVHK ATPKKILAYM DLNYLTRAHV ASKLQKYRKF  120
LRKVREEGVE TARRATISNL RSSSGIKPQR YNTSRNKINL LDSQPGYGLG QSSPMMNNNA  180
DFHGSVNYMN LGPPYNLSQN GSNLLLMSGG LGFTNGMFPF KEGIPGTSQE SQPPMFGNYG  240
TTSDVLGMNS ILTTGTTGGN YAGIGIDERG VNGNDNGSLG GMRVHDTGSL GGIGVHGTVT  300
GSLGGIGVHG TGNGSLGEIQ LHGTGNGSLG ETQVHGTGSL GGIGVLGTVS NGSPGGIGVH  360
GTGNGSLGEI QVHGTGSLGG IGVHGTAING SPGEIPVPGT GNGSLGEIQV HGTGSLGGIG  420
VHGTASNGSP GEIQLHGTGN GSLGEIQVHG TGSLGGIGVH GTASNGSPGE IQLHGTGNGS  480
LGEIQVHGVH GTASNGSPGE IQLHGTGNGS LGEIQVHGTG SLGGIGVHGT ASNGSPGEIQ  540
LHGTGNGSLG EIQVHGTGSL GGIGVHGTAS NGSPGEIQLH GTGNGSLGEI QVHGTGSLGG  600
IGVHGTGNGS LGEIQVHGTS NGSLGGLHDT GALGGIGVHG TGNGSLDEIQ VHGTSNGSLG  660
GLHDTGAVGG IGVHGTGNGS LGEIQVHGTS NGNGCLSENL GGMNWNFSNE NMSNHGSSTS  720
RFPSALSSFF DNMDQSQTYV MNAQIDGVVP VLENPRIFND HHGINEIFGN TINSQFDQNQ  780
HQGNVTGENH EVSAAYPLED INNLSSNNAV YNEETLNSGA ANSEMYFPTD HAMNITNQEH  840
GVEDFTQLPS LIDQEFEDGN FMKHLLDHDM N
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739736
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617959.10.0PREDICTED: filaggrin-2-like
TrEMBLA0A3N6RD270.0A0A3N6RD27_BRACR; Uncharacterized protein
STRINGBo3g108010.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1654279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62110.14e-27G2-like family protein