PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739762
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 184aa    MW: 20942.6 Da    PI: 7.5588
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739762genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.3e-4071061100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrrkC++dCv+apyfpa+++ k+ +vhk+FGas+v  +lk+l++++re+am+sl++eA+ar++dPv G++++i +lq+ql+ ++++++ +++e
  676739762   7 PCAACKYLRRKCTTDCVFAPYFPANKQDKYDAVHKVFGASHVATILKELHPSHREAAMNSLAFEAKARLHDPVFGCTRIIYNLQRQLKDVQEQIQITRNE 106
                7**********************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.536107IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-397104IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:3.40.50.20206.4E-4956IPR029057Phosphoribosyltransferase-like
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENMSTPCAA CKYLRRKCTT DCVFAPYFPA NKQDKYDAVH KVFGASHVAT ILKELHPSHR  60
EAAMNSLAFE AKARLHDPVF GCTRIIYNLQ RQLKDVQEQI QITRNELASY NIVPTLEPPP  120
PITYQQYHHN PTLMPAVSNY GGQLTSQQFP QLRDAAHRFE TKNSDQIQQT HADDAAQSER  180
DNCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3531107114LOB family transfactor Ramosa2.1
5ly0_B3e-3531107114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739762
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404026.11e-86LOB domain-containing protein 28
SwissprotQ9SCS43e-68LBD28_ARATH; LOB domain-containing protein 28
TrEMBLV4LNZ62e-85V4LNZ6_EUTSA; Uncharacterized protein
STRINGXP_006404026.14e-86(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.11e-70LOB domain-containing protein 28