PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739764
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 111aa    MW: 12962.1 Da    PI: 7.9659
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739764genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26075.88e-2441042100
     DUF260   2 CaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil.klqqqleqlkaelallke 99 
                Ca Ck   r +C+++C+la yfpa++p+k+a++    G+sn++++lk++++++r++ ++sl+ e ear rdPv G++g+    l+++l+ lk+ l+ +++
  676739764   4 CATCKEEARqECTQECMLAAYFPANEPEKYACLTYAMGMSNLIRILKEVDPSQRQACVDSLYTEVEARRRDPVWGSCGMQCiLLKRRLQDLKHRLEIAQR 103
                *****987769*******************************************************************965167999*****99999988 PP

     DUF260 100 e 100
                +
  676739764 104 Q 104
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.8782105IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MELCATCKEE ARQECTQECM LAAYFPANEP EKYACLTYAM GMSNLIRILK EVDPSQRQAC  60
VDSLYTEVEA RRRDPVWGSC GMQCILLKRR LQDLKHRLEI AQRQLIFRSR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-19410612112LOB family transfactor Ramosa2.1
5ly0_B1e-19410612112LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739764
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A397YVE54e-34A0A397YVE5_BRACM; Uncharacterized protein
STRINGBostr.6864s0195.1.p4e-25(Boechera stricta)
STRINGXP_010431215.18e-25(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-26ASYMMETRIC LEAVES 2-like 1