PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676739854

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 245aa MW: 26772.2 Da PI: 6.723

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676739854	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.3	1.8e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++ ++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e++ 676739854 2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQCAALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQAAVETV 101 6***********************************************************************************************9998 PP DUF260 96 ll 97 l+ 676739854 102 LR 103 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.287	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC 60 AALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLRPI PELLTRDGGF 120 GGFPSPTSDE ASEICTEMLN DSGDRNIYHH CRFSSSRSRS TASPPKRKRL ASEQQQQRPS 180 SSSELDLSLI PTFPIKTTPL KEETVRPETP SIYSEESDTT TSFPDNGERF LRGGGETTKL 240 LNLFA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676739854

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013691297.1	1e-155	LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-135	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A3P5YEH0	1e-153	A0A3P5YEH0_BRACM; Uncharacterized protein
STRING	Bra036040.1-P	1e-153	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-121	LOB domain-containing protein 38