PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676740534

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 506aa MW: 56643 Da PI: 9.9028

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676740534	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.9	1.5e-12	19	96	10	94
HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ +++l++p f+ +h + k+esk+l+l++ r+Wevkl ++++ +++GW++F a+ +e D+++F+ dg ++f +v 676740534 19 AGHNSNLIIPDAFFPTHlD-GKNESKKLKLTSdAFDRTWEVKL--KGRR----FAGGWEDFSAAHSPREDDVLIFRQDGGMTF--HV 96 456778*********63.4568899999986778***..7776....99*******************6665666..55 PP
2	B3	43.4	6.3e-14	169	259	6	98
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++s++l+++r++l ++f+ +g+ k + + l++++g+s v+l+++k g+ ++++ W++F+++n+L++g f Fk ++ ++ ++ +++++ 676740534 169 VTSSNLRLNRVSLARTFTIPNGLHKSCC-VIDLMNQTGKSRVVYLRHNKVTGQDYMRGAWRSFCRENKLQTGSFYRFKIVR-NGIRPALQLCS 259 589*****************999876.9***********99999999899********************876.66667777776 PP
3	B3	55.6	9.4e-18	294	388	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f +v++++++ ks++l+lp++fa+e+g++k ++tl d++g + + ++g++++t+GW + ++a g+ +g+++++k+++ +++++ +++++k 676740534 294 FMTVTLKPYMVKSRQLRLPRSFARENGIEKG--EKITLVDRNGGVCPSCV--ASSKGGFYITRGWISCCEASGITTGETFTLKFVRGEGKTPILQFCSK 388 7788999*****************98855..58***********..99***************************99******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.24E-13	8	100	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-13	9	98	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.124	10	102	IPR003340	B3 DNA binding domain
CDD	cd10017	4.99E-12	12	97	No hit	No description
SMART	SM01019	4.7E-15	13	102	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.7E-14	157	254	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-12	159	259	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.051	164	261	IPR003340	B3 DNA binding domain
SMART	SM01019	4.2E-14	166	261	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-12	169	259	IPR003340	B3 DNA binding domain
CDD	cd10017	2.18E-9	171	259	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.3E-16	286	388	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-15	289	387	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.23E-11	292	379	No hit	No description
SMART	SM01019	2.2E-20	294	389	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.701	294	388	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.4E-17	294	388	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MDPPFFPKSN APFFVISLAG HNSNLIIPDA FFPTHLDGKN ESKKLKLTSD AFDRTWEVKL 60 KGRRFAGGWE DFSAAHSPRE DDVLIFRQDG GMTFHVTPSG RSFSQILCIS SSSEDSEDDK 120 DNDEDDVDDE DDDKEIWDKV SDSRNISSKK KSRLEAESSS SENSCFLGVT SSNLRLNRVS 180 LARTFTIPNG LHKSCCVIDL MNQTGKSRVV YLRHNKVTGQ DYMRGAWRSF CRENKLQTGS 240 FYRFKIVRNG IRPALQLCSD NTPQGKSSKA NRKARVSAKS HRKGGSSSAS QRKFMTVTLK 300 PYMVKSRQLR LPRSFARENG IEKGEKITLV DRNGGVCPSC VASSKGGFYI TRGWISCCEA 360 SGITTGETFT LKFVRGEGKT PILQFCSKAE AKVNTNYLCY KAQAPFNAPR GSGKASRDEE 420 ETGIRFQKKA RISVEGEASR RTQASRKSTV DPKNMQCKQP LHIISDQVRQ SIVDVLADVR 480 RFRSELEIKE QTLEAVLQKI DVLGMI

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MDPPFFPKSN APFFVISLAG HNSNLIIPDA FFPTHLDGKN ESKKLKLTSD AFDRTWEVKL  60
KGRRFAGGWE DFSAAHSPRE DDVLIFRQDG GMTFHVTPSG RSFSQILCIS SSSEDSEDDK  120
DNDEDDVDDE DDDKEIWDKV SDSRNISSKK KSRLEAESSS SENSCFLGVT SSNLRLNRVS  180
LARTFTIPNG LHKSCCVIDL MNQTGKSRVV YLRHNKVTGQ DYMRGAWRSF CRENKLQTGS  240
FYRFKIVRNG IRPALQLCSD NTPQGKSSKA NRKARVSAKS HRKGGSSSAS QRKFMTVTLK  300
PYMVKSRQLR LPRSFARENG IEKGEKITLV DRNGGVCPSC VASSKGGFYI TRGWISCCEA  360
SGITTGETFT LKFVRGEGKT PILQFCSKAE AKVNTNYLCY KAQAPFNAPR GSGKASRDEE  420
ETGIRFQKKA RISVEGEASR RTQASRKSTV DPKNMQCKQP LHIISDQVRQ SIVDVLADVR  480
RFRSELEIKE QTLEAVLQKI DVLGMI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676740534

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013666957.1	0.0	B3 domain-containing protein REM3-like
Swissprot	Q8VZQ9	1e-179	REM3_ARATH; B3 domain-containing protein REM3
TrEMBL	A0A3P5Z5B7	0.0	A0A3P5Z5B7_BRACM; Uncharacterized protein
STRING	Bra011286.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9658	15	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31620.1	0.0	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]