PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676740536

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 524aa MW: 59261.2 Da PI: 6.517

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676740536	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.9	7.5e-13	5	79	17	98
E--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p +f+++h + k +s++l+l++ s +sWev+l +++++++GWk+F + ++ D++ F++dg++ f +v+ f 676740536 5 MIPDSFISNHlK-GKIQSTKLKLTSdASDKSWEVEL------DGHTFARGWKHFSLRHSVRNDDILSFRHDGDMVF--HVTPFG 79 79******63.4568999999987899***......5566***********************99999..777665 PP
2	B3	70.1	2.9e-22	162	255	4	99
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++s++l++++++l++kfa+++g+++++ ++ l + +g+sW++ l+++k+ g+ ++ +GW +F+k+ng+k+ f+ Fkl++ s++++v++++ + 676740536 162 AHVTSSNLRRNNMCLSNKFARSNGLNNRQ-CEIDLLNHNGKSWTLDLRHNKTTGQAFMCRGWTSFCKENGIKAESFCRFKLVQ-SGTKPVLQLCPN 255 5689*****************999766.5********************9999*******************98.99999999975 PP
3	B3	41	3.5e-13	303	393	6	99
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfrk 99 +++++lksg+l+lp +f +e+g+++++ ++t+ +++g +W++ l k++g+++++ G k+ ang+k +gD++++ ++ ++++ +k+++k 676740536 303 LKPYMLKSGQLRLPASFSRENGINEAG--EITIVNKDGVEWKLDLVSIKGRGQFYIK-GSKNCFLANGIKkVGDSFTLDIIR-GGTSPILKICSK 393 5799****************99877..79999*******999999999999.*******99****887.88889**987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.35	1	81	IPR003340	B3 DNA binding domain
SMART	SM01019	4.2E-8	1	81	IPR003340	B3 DNA binding domain
CDD	cd10017	9.72E-11	5	78	No hit	No description
SuperFamily	SSF101936	5.49E-13	5	81	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.7E-14	6	81	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.7E-22	152	255	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-21	155	257	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.0E-27	159	256	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.957	159	255	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-21	162	255	IPR003340	B3 DNA binding domain
CDD	cd10017	2.68E-19	166	254	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.4E-8	294	393	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.797	298	394	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-16	298	394	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.44E-9	300	395	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	8.6E-13	303	393	IPR003340	B3 DNA binding domain
CDD	cd10017	3.81E-9	303	392	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MVDPMIPDSF ISNHLKGKIQ STKLKLTSDA SDKSWEVELD GHTFARGWKH FSLRHSVRND 60 DILSFRHDGD MVFHVTPFGR SFSHLIQLVP FTSEDENDRF NDDEHNIFDD DVYDDDDENA 120 DVGDDDDEYS SSEEELYPNK TSSKKRAKTE TESSSENSYL VAHVTSSNLR RNNMCLSNKF 180 ARSNGLNNRQ CEIDLLNHNG KSWTLDLRHN KTTGQAFMCR GWTSFCKENG IKAESFCRFK 240 LVQSGTKPVL QLCPNTSTIL SQGNSSKTIE KRNLPETEGD EIESEDRSET ASMNQNRTAA 300 LELKPYMLKS GQLRLPASFS RENGINEAGE ITIVNKDGVE WKLDLVSIKG RGQFYIKGSK 360 NCFLANGIKK VGDSFTLDII RGGTSPILKI CSKIKEASVD GYQTTNRRPP RMNQASRAEE 420 EMETCVHKKA RVSAEGGPSH RTRASNKLSV DPENLQHKKP LQPCSISDQV RKVKQSIVQA 480 LTDVRRFRSE LEIKEQNLET SLLEIDVLEE KIMGISKFFN INQA

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MVDPMIPDSF ISNHLKGKIQ STKLKLTSDA SDKSWEVELD GHTFARGWKH FSLRHSVRND  60
DILSFRHDGD MVFHVTPFGR SFSHLIQLVP FTSEDENDRF NDDEHNIFDD DVYDDDDENA  120
DVGDDDDEYS SSEEELYPNK TSSKKRAKTE TESSSENSYL VAHVTSSNLR RNNMCLSNKF  180
ARSNGLNNRQ CEIDLLNHNG KSWTLDLRHN KTTGQAFMCR GWTSFCKENG IKAESFCRFK  240
LVQSGTKPVL QLCPNTSTIL SQGNSSKTIE KRNLPETEGD EIESEDRSET ASMNQNRTAA  300
LELKPYMLKS GQLRLPASFS RENGINEAGE ITIVNKDGVE WKLDLVSIKG RGQFYIKGSK  360
NCFLANGIKK VGDSFTLDII RGGTSPILKI CSKIKEASVD GYQTTNRRPP RMNQASRAEE  420
EMETCVHKKA RVSAEGGPSH RTRASNKLSV DPENLQHKKP LQPCSISDQV RKVKQSIVQA  480
LTDVRRFRSE LEIKEQNLET SLLEIDVLEE KIMGISKFFN INQA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676740536

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022551145.1	0.0	putative B3 domain-containing protein REM4 isoform X1
Swissprot	Q9SB79	0.0	REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBL	A0A398ALW0	0.0	A0A398ALW0_BRACM; Uncharacterized protein
STRING	Bra011288.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9658	15	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31630.1	0.0	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]