PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740538
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 288aa    MW: 33458.3 Da    PI: 8.3389
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740538genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17211001097
                HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++++ l +p kf+++h +g k++  t+ l++ +s r W vk+      ++++lt+GWkeFvka++L+  D+v+F+++g++ f  +v++f
  676740538  21 GFQRH-LKIPVKFFSKHiEG-KHQAETVNLKSdSSERIWIVKM------EGHMLTDGWKEFVKAHDLRLYDVVIFRHEGDMLF--HVTAF 100
                45555.9**********644.457779***996777*******......7899***********************9999888..88776 PP
2B348.51.5e-15157250195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k + ++++l++g   lp +f+++++++k++  +++l d+   +W+++l+ + + g+ y++  +GWk+F+ an++ +g++++++l++     +++k
  676740538 157 FVKMTPTASSLERGKQHLPTHFMKANKLNKPG--KMILVDKYKVEWSMNLKADSRTGTmYIMDrQGWKSFCAANEVVAGESLTLELIRGG-DIPLLK 250
                7788888999999****************776..7***************884444444544449********************99843.335555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-237105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-218109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.23811103IPR003340B3 DNA binding domain
CDDcd100177.12E-1612100No hitNo description
SMARTSM010191.3E-2014103IPR003340B3 DNA binding domain
PfamPF023622.0E-122397IPR003340B3 DNA binding domain
CDDcd100173.61E-15156244No hitNo description
PROSITE profilePS5086312.026157254IPR003340B3 DNA binding domain
SMARTSM010195.0E-23157255IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-16157253IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-14157252IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-17157257IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MENASLFSPE NPHFFQPLLT GFQRHLKIPV KFFSKHIEGK HQAETVNLKS DSSERIWIVK  60
MEGHMLTDGW KEFVKAHDLR LYDVVIFRHE GDMLFHVTAF GTGCCEIQYA PFVSHVKDEE  120
ESDRIEECSR KKKEIEEDSK TESDDSSSDL SFLKSRFVKM TPTASSLERG KQHLPTHFMK  180
ANKLNKPGKM ILVDKYKVEW SMNLKADSRT GTMYIMDRQG WKSFCAANEV VAGESLTLEL  240
IRGGDIPLLK FYSKMEQPPL KQRLEDTREL RVQRLSQESR SKHDVRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004601.11e-120B3 domain-containing protein REM8
TrEMBLA0A3P5ZUL88e-90A0A3P5ZUL8_BRACM; Uncharacterized protein
STRINGBra023990.1-P4e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-78B3 family protein