PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740542
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 389aa    MW: 43872.5 Da    PI: 9.2159
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740542genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.9e-2127121299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f++ +++++++++   +p  fa+++g+ + +s++++l++e+grsW  +l  r  s+r+v+ +GW +F+ an+L++gD+++F+l + + + +v++++++
  676740542  27 FSQYVTASNMSRDTAGVPSAFAKRNGLYE-GSQDIVLMNEEGRSWPSEL-KRLASCRIVICRGWTSFCIANKLQVGDSCTFQLLQ-NAKMPVFQLCSQ 121
                6788999******************9885.778****************.5888999*************************998.666689999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2219121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-2120120IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-2026122IPR003340B3 DNA binding domain
CDDcd100177.47E-2026120No hitNo description
PROSITE profilePS5086314.57926121IPR003340B3 DNA binding domain
PfamPF023621.7E-2027121IPR003340B3 DNA binding domain
CDDcd100171.44E-6145225No hitNo description
SuperFamilySSF1019366.47E-9146230IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.7E-6146227IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-5146226IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MANASLFPPA NPPTVKSNQY SSDLTCFSQY VTASNMSRDT AGVPSAFAKR NGLYEGSQDI  60
VLMNEEGRSW PSELKRLASC RIVICRGWTS FCIANKLQVG DSCTFQLLQN AKMPVFQLCS  120
QTKAERKKEI QSEEDNIAER TDENRFVKLT PTLIGLERGK QHLPLSFTRV NGLIKREKIS  180
LVDKNGDEWL MELKSFCAVN EVGGGESLFL ELIHGGGSPL FKFCSKMEQP PFEAETRAPK  240
RVRIQKWIQE TRVTRPKLEI REKTAEEGEP SHRTRESNKT IASQGNLHET LPCSIPNQMM  300
IKVKHNVFCI LTSIRRFGVE LETMEQKLKD SLKDINNLVL VIALTPFTNS SMLCTQRGEH  360
KLTKGKKQHP QVIIKFRCGS EGHPQTSIV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467816.11e-154PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D11e-109REM8_ARATH; B3 domain-containing protein REM8
TrEMBLD7MB411e-117D7MB41_ARALL; Uncharacterized protein
STRINGscaffold_701042.11e-118(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-112B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]