PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740550
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 744aa    MW: 84532.3 Da    PI: 10.4312
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740550genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-1821931390
               TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
               +++l++p  f+++h +   +++kt++l++  s  +Wev++  ++++    lt+GWkeFv a++L+ gD++vF++dg+  f
  676740550 21 HSQLSIPVAFFSKHvE-GRNQGKTVKLRSdASDTTWEVEI--DGRR----LTGGWKEFVTAHDLRIGDVLVFRHDGDLVF 93
               567***********63.456899*****97888*******..9998....***********************8775333 PP
2B356.16.6e-18152241498
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + ++ ++l+ + +++p +f++++g++k+ s +++l +e grsW+++l     +++++++ GW++F+kang++ g   +Fkl++ +++++v+++++
  676740550 152 ANVTVSSLRDDKVYIPVSFVRSNGLSKTYS-KIVLLNEMGRSWNLRL--VHAKCGTYIRHGWRRFCKANGINGGRY-TFKLVQ-RSGTPVIRLYQ 241
                5678899999****************9887.9***************..8888889****************9985.****99.56669998876 PP
3B362.85.7e-20259346796
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                ++++l ++ l+l+++f++++g+k  +  +++l++e+g +W++ l+++k+s+++v+++GW++F+ ang+k++D + Fkl++ +++++v+++
  676740550 259 TPSSLHNDALYLSRRFVNSNGLKDGCC-EMILKNENGGTWTLVLTHNKSSNTTVISRGWRSFCLANGIKARDPFRFKLVE-TGEKPVLRF 346
                566777788***********9998775.*************************************************998.666677766 PP
4B335.12.4e-11438522389
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                + +++ ++  +   +lp +f++ +g++k++  ++tl  ++g   +v l  +++ gr+ l+k Wk+F +a+g+k g+++v++l+++++
  676740550 438 TLTITQSTILLFAQRLPLRFTKVNGINKAG--KITLLGKDGIYRKVHLAKENRHGRMRLGKDWKGFFQAHGVKIGESLVLELVRKKD 522
                556666666667779******999999887..7***************9999999**************************997654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-236103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-226108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.9859101IPR003340B3 DNA binding domain
CDDcd100173.50E-191095No hitNo description
SMARTSM010193.2E-2512101IPR003340B3 DNA binding domain
PfamPF023623.8E-132194IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18142236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-16143236IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-12149240No hitNo description
PROSITE profilePS5086313.112149243IPR003340B3 DNA binding domain
SMARTSM010192.6E-22150243IPR003340B3 DNA binding domain
PfamPF023621.4E-16151241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-17252346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-20253351IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.943253349IPR003340B3 DNA binding domain
SMARTSM010196.8E-24254350IPR003340B3 DNA binding domain
PfamPF023622.2E-18258346IPR003340B3 DNA binding domain
CDDcd100175.52E-18258348No hitNo description
Gene3DG3DSA:2.40.330.101.8E-14428521IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-15430520IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-12435521No hitNo description
PfamPF023627.7E-11436522IPR003340B3 DNA binding domain
SMARTSM010195.3E-12436527IPR003340B3 DNA binding domain
PROSITE profilePS508638.896436546IPR003340B3 DNA binding domain
PfamPF001252.8E-22567652IPR007125Histone H2A/H2B/H3
SuperFamilySSF471135.48E-28568652IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.0E-46568650IPR009072Histone-fold
PRINTSPR006224.1E-44569583IPR000164Histone H3/CENP-A
PROSITE patternPS003220581587IPR000164Histone H3/CENP-A
PRINTSPR006224.1E-44583597IPR000164Histone H3/CENP-A
SMARTSM004286.5E-7600658IPR000164Histone H3/CENP-A
PRINTSPR006224.1E-44600621IPR000164Histone H3/CENP-A
PRINTSPR006224.1E-44624641IPR000164Histone H3/CENP-A
PROSITE patternPS009590633641IPR000164Histone H3/CENP-A
SuperFamilySSF471131.24E-36656741IPR009072Histone-fold
PfamPF001258.3E-41658740IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.102.0E-53658742IPR009072Histone-fold
SMARTSM004281.3E-57659744IPR000164Histone H3/CENP-A
PROSITE patternPS009590675683IPR000164Histone H3/CENP-A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MAVLQSPKNP HFFQPLLPGF HSQLSIPVAF FSKHVEGRNQ GKTVKLRSDA SDTTWEVEID  60
GRRLTGGWKE FVTAHDLRIG DVLVFRHDGD LVFHVIALGP SFCEVEYSSA HGIDDDSGDH  120
KDSIEIKPIK KRAKKSPKIE EDSSSDHSCF VANVTVSSLR DDKVYIPVSF VRSNGLSKTY  180
SKIVLLNEMG RSWNLRLVHA KCGTYIRHGW RRFCKANGIN GGRYTFKLVQ RSGTPVIRLY  240
QAEHRHEDNI HSYLIGSLTP SSLHNDALYL SRRFVNSNGL KDGCCEMILK NENGGTWTLV  300
LTHNKSSNTT VISRGWRSFC LANGIKARDP FRFKLVETGE KPVLRFLPAA SNSDTRQVDC  360
LESNDVNSLS TNSSSGEECS ETDESEETSR DDISVKEENE KESVEDKSSF RECLNTEKWK  420
YCSKPRASSS PSQNRFVTLT ITQSTILLFA QRLPLRFTKV NGINKAGKIT LLGKDGIYRK  480
VHLAKENRHG RMRLGKDWKG FFQAHGVKIG ESLVLELVRK KDAMGKEDEA KPHTRKHFHN  540
LLFRDRSTNL NSEKQREVSK KKVREKMART KQTARKSTGG KAPRKQLATK AARKSAPTTG  600
GVKKPHRYRP GTVALREIRK YQKSTELLIR KLPFQRLVRE IAQDFKTDLX VSLILVDSEI  660
RKYQKSTELL IRKLPFQRLV REIAQDFKTD LRFQSHAVLA LQEAAEAYLV GLFEDTNLCA  720
IHAKRVTIMP KDIQLARRIR GERA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hq3_C5e-785677441136HISTONE H3
1hq3_G5e-785677441136HISTONE H3
1tzy_C5e-785677441136HISTONE H3
1tzy_G5e-785677441136HISTONE H3
2aro_C5e-785677441136HISTONE H3
2aro_G5e-785677441136HISTONE H3
2f8n_A5e-785677441136Histone H3.1
2f8n_E5e-785677441136Histone H3.1
2hio_C5e-785677441136PROTEIN (HISTONE H3)
4kgc_A5e-785677441136Histone H3.2
4kgc_E5e-785677441136Histone H3.2
4ld9_A5e-785677441136Histone H3.2
4ld9_E5e-785677441136Histone H3.2
4uuz_A5e-785677441136HISTONE H3
5kgf_A5e-785677441136Histone H3.2
5kgf_E5e-785677441136Histone H3.2
5x0x_A5e-785677441136Histone H3.2
5x0x_E5e-785677441136Histone H3.2
6dzt_A5e-785677441136Histone H3
6dzt_E5e-785677441136Histone H3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3172571e-104AK317257.1 Arabidopsis thaliana AT4G40040 mRNA, complete cds, clone: RAFL22-44-F05.
GenBankAK3174901e-104AK317490.1 Arabidopsis thaliana AT4G40040 mRNA, complete cds, clone: RAFL23-11-O21.
GenBankAY0866681e-104AY086668.1 Arabidopsis thaliana clone 2670 mRNA, complete sequence.
GenBankBT0023911e-104BT002391.1 Arabidopsis thaliana Histon H3 (At4g40040) mRNA, complete cds.
GenBankBT0033261e-104BT003326.1 Arabidopsis thaliana Histone H3 (At4g40040) mRNA, complete cds.
GenBankBT0254991e-104BT025499.1 Arabidopsis thaliana At4g40040 mRNA, complete cds.
GenBankDQ2452931e-104DQ245293.1 Zea mays clone 14337 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447536.10.0PREDICTED: B3 domain-containing protein REM17-like
RefseqXP_019089532.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A397YAZ00.0A0A397YAZ0_BRACM; Uncharacterized protein
STRINGA0A087GIR50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-128B3 family protein