PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740606
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 714aa    MW: 80247.1 Da    PI: 7.298
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740606genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.93.4e-26190243155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr+ Wt eLH++F+ av++L G ekA+Pk+il+lm+v+ Lt+e+v+SHLQk+R+
  676740606 190 KPRVLWTRELHNKFLAAVDHL-GVEKAVPKKILDLMNVDKLTRENVASHLQKFRS 243
                79*******************.********************************7 PP
2Response_reg84.82.5e-28191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+++ +++l+++l + +y +v+++d+++ alell+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++++++ + +k Ga 
     676740606  19 VLAVDDDQTCLRILETLLHRCQY-HVTTTDQAQTALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVKHGAC 113
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+  Kp+ +eel +
     676740606 114 DYMLKPVRIEELKN 127
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-3516137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.8E-4316171No hitNo description
SMARTSM004483.8E-3317129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.87718133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2519127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.46E-2820132No hitNo description
PROSITE profilePS5129413.883187246IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-27187248IPR009057Homeodomain-like
SuperFamilySSF466898.6E-19188247IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24190243IPR006447Myb domain, plants
CDDcd092727.09E-33548640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MTVEQDFEAL DQFPVGMRVL AVDDDQTCLR ILETLLHRCQ YHVTTTDQAQ TALELLRENK  60
NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD PKYVMKGVKH GACDYMLKPV  120
RIEELKNIWQ HVVRKSKFKK MKSSLANGES EGNSGQNGLK ANRKRKDQFE EEEEEEERGN  180
ENDDPTAQKK PRVLWTRELH NKFLAAVDHL GVEKAVPKKI LDLMNVDKLT RENVASHLQK  240
FRSALRKITN EANQQANMAA MDSHLMQMSS LKGLGGFHHH RPIPLGSGQF HGGAATMRHY  300
PSNRTLGRLN SLAGMFPHVS SSLPRNHNDG GYILEGLPIP PLDDLHMNNN NKAFPSFTSQ  360
QSSLMVAPNN HLVLGGHQLS SSPSLNPGFS PHFEINKRLE GWSNTVLSNN IPQSNVHSKQ  420
DALEWNLFDD SASPLRNPNL DTTDPTSFCR DTDFGSSNAA QADFFDTLQM KQQPENNLGP  480
MTVAQQLRSS SAKEGLLMEQ QKPENGFMAS DVGSLDDIVN SMMTQEVELF ALPINLCWRN  540
YGKKRVKKYR TLSLTATELK WISALLREVG VSQPVTPELY YDNLSSVYLT ANPAIHSRTK  600
HFDVDFHYVR ERVALGALIV KHVPAKQQLA DIFTKSFPQQ PFSDLRYKLG VVLPPTPNTG  660
PINQAQSQKP ISPQLPFLCN GNKELQSNRT TCTAHTLQLR NRFDPLCLQS ITCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-32186249164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00072SELEXTransfer from AT4G31920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535330.0AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412536.20.0LOW QUALITY PROTEIN: two-component response regulator ARR10
SwissprotO493970.0ARR10_ARATH; Two-component response regulator ARR10
TrEMBLV4MC700.0V4MC70_EUTSA; Two-component response regulator
STRINGXP_006412536.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.10.0response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  4. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  5. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  6. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  10. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  11. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  12. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]