PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740634
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TALE
Protein Properties Length: 379aa    MW: 42953.2 Da    PI: 6.2362
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740634genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox154.2e-053193462754
                HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  27 aeereeLAkklgLterqVkvWFqNrRak 54 
                +e++++L +++gL+ +q+ +WF N+R +
  676740634 319 EEDKAKLVQETGLQLKQINNWFINQRKR 346
                678999********************87 PP
2ELK26.81.2e-09260281122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++++++++++++E++
  676740634 260 ELKHELKQGFKEKIVDIREEIM 281
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-1995139IPR005540KNOX1
PfamPF037902.6E-1797138IPR005540KNOX1
SMARTSM012561.4E-25146201IPR005541KNOX2
PfamPF037912.8E-19151200IPR005541KNOX2
PROSITE profilePS512139.446260280IPR005539ELK domain
SMARTSM011886.2E-4260281IPR005539ELK domain
PfamPF037892.9E-6260281IPR005539ELK domain
SMARTSM003892.3E-4282354IPR001356Homeobox domain
SuperFamilySSF466896.84E-12282355IPR009057Homeodomain-like
CDDcd000868.55E-9283346No hitNo description
Gene3DG3DSA:1.10.10.603.6E-22287352IPR009057Homeodomain-like
PfamPF059201.1E-12300346IPR008422Homeobox KN domain
PROSITE profilePS500719.135319350IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009727Biological Processdetection of ethylene stimulus
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSFNSSHLIP QPEDLPLRHL SDQSQQQQQQ QQQQQPQPTS ESNFAPPHRS GDRRWLSFHS  60
EIQNNSGEGH PEVIDGVNGD RETVDGVAGE DWRSASCKAA ILRHPMYEQL LAAHVACLRV  120
ATPVDQIPRI DAQLSELHNV AAKYSTLGVV MDNKELDHFM SHYVVLLCSF KEQLQHHVCV  180
HAMEAITACW EIEQSLQSIT GVSPSESNVK TMSDDEDDNQ VESEVNVFDG SLDGSDCMMG  240
FGPLVPTERE RSLMERVKKE LKHELKQGFK EKIVDIREEI MRKRRAGKLP GDTTSVLKEW  300
WRTHAKWPYP TVKASANKEE DKAKLVQETG LQLKQINNWF INQRKRNWNS NSSTSSTLSK  360
NKPLAVLEGR FLVLNSDVA
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525800.0AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194932.10.0homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A178V1Z30.0A0A178V1Z3_ARATH; KNAT5
STRINGAT4G32040.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5