PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676741040
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28786.3 Da    PI: 7.8468
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676741040genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.67e-231059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               + e+k +rqvtf+kR++ +lKKA ELSvLCd+ + +iifs+t++ly ++s
  676741040 10 KLEDKVKRQVTFAKRKKSLLKKARELSVLCDVPIGLIIFSQTDRLYSFCS 59
               679*********************************************96 PP
2K-box37.51e-13981692291
      K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke..lqeen 91 
                  + +eienL+ ++  + G +L+ L++ +L + e qLe+sl++ R++K el++ q ++ + k ke  ++een
  676741040  98 GSMLREIENLKMNLQLYRGHGLNLLTYDDLLRFELQLESSLQNARARKLELMHLQHQTDKPKGKEilMDEEN 169
                468899**********************************************98888887766651145555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.175161IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-21323IPR002100Transcription factor, MADS-box
CDDcd002654.21E-33479No hitNo description
SuperFamilySSF554551.44E-24476IPR002100Transcription factor, MADS-box
PfamPF003193.5E-211157IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.05790187IPR002487Transcription factor, K-box
PfamPF014862.2E-899171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030308Biological Processnegative regulation of cell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048530Biological Processfruit morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MREGKVVIKK LEDKVKRQVT FAKRKKSLLK KARELSVLCD VPIGLIIFSQ TDRLYSFCSH  60
STSMENLIMR YQMAKEGDAA AVHSFHPYHG SNCEEAKGSM LREIENLKMN LQLYRGHGLN  120
LLTYDDLLRF ELQLESSLQN ARARKLELMH LQHQTDKPKG KEILMDEENQ HFYHPGQGSS  180
WEHLMWQAER QMIMTCHKEE DDDFMRRQVK EKFPFCGDEQ PTGFLQLLLW FCLEPRTVDR  240
CLMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-13198195MEF2C
5f28_B1e-13198195MEF2C
5f28_C1e-13198195MEF2C
5f28_D1e-13198195MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00172DAPTransfer from AT1G31140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676741040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306362.25e-95agamous-like MADS-box protein AGL63
SwissprotQ9SA071e-85AGL63_ARATH; Agamous-like MADS-box protein AGL63
TrEMBLA0A0D3CF401e-126A0A0D3CF40_BRAOL; Uncharacterized protein
STRINGBo5g065750.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16860910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.22e-77GORDITA
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]