PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676741098
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 618aa    MW: 68430.9 Da    PI: 7.7459
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676741098genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71e-16235284155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  676741098 235 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 284
                78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-15235292IPR016177DNA-binding domain
PfamPF008471.7E-8235284IPR001471AP2/ERF domain
CDDcd000183.94E-11235291No hitNo description
PROSITE profilePS5103217.359236292IPR001471AP2/ERF domain
SMARTSM003803.4E-30236298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-16236292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MEPETGDNRC PIAEKDGARI IIYMFLCCHY PQAYVPSFAD ANLLVRRQAY SPSLSHSPPP  60
RERHTQTLIA ILMLDLNLDV DSGESTQNGR DSSAVKVVLN QMDESVTSNS SVVNAEASSC  120
IDGEDELCST RAVKFQFEIL KRGGGGGRDD EDEEEEDERR SVVMTKDFFP VAKGDGDGVS  180
FLDTSAQCSR SSVDISFQRG KQGGDFLGGD AAARVMQPPA QPVKKSRRGP RSKSSQYRGV  240
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAV KFRGLEADIN FIISDYEDDL  300
KQMANLSKEE VVQVLRRQSS GFSRNNSRYQ GVAMQKIGGW GAQMEQLNGN IDSDGYDTVI  360
YLRVIVICVS CMLLVIVDLN KMASFLLKYL FWKFCKTNCS YFYGIRAYDK AATKWNGREA  420
ASFIEPHASR MIPEAANVKL DLNLGISLSL GDGPKQKDRP PRLHHAPNSI GYGRNSKMEN  480
HMAAATCDTP FNFLKRGSDH LINRHVHPSA LFSPMERTPE KGFMSHPPQS FQARTWQAQD  540
QPSGGTATTA VAPTLYSNAA SSGFSLSATR PPSSSTATTH PSQPFLNLNM PGLYVIHPAD  600
YASQQHHHHL MNRSQPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676741098
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529460.0AK352946.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874049.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X2
RefseqXP_020888751.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A1J3D1V30.0A0A1J3D1V3_NOCCA; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A1J3HQJ10.0A0A1J3HQJ1_NOCCA; AP2-like ethylene-responsive transcription factor TOE2
STRINGfgenesh2_kg.71__6__AT5G60120.10.0(Arabidopsis lyrata)
STRINGfgenesh2_kg.8__1967__AT5G60120.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2